Cluster: HRGMv2_0621_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0621
- CGC Family ID: CGCFAM_03723
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0621_17 | HRGMv2_0621_17_4 | 4003 | 5382 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_0621_17 | HRGMv2_0621_17_5 | 5539 | 5781 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0621_17 | HRGMv2_0621_17_6 | 5671 | 6480 | - | adh_short | adh_short_C2 |
| CAZyme | HRGMv2_0621_17 | HRGMv2_0621_17_7 | 6679 | 8358 | - | GH23 |
| pfam | HRGMv2_0621_17 | HRGMv2_0621_17_8 | 8480 | 9160 | - | Rib_5-P_isom_A |
| TC | HRGMv2_0621_17 | HRGMv2_0621_17_9 | 9369 | 11162 | - | 2.A.37.1.5 |
Gene ID: HRGMv2_0621_17_4
Type: TC
Location: 4003 - 5382 (-)
Type: TC
Location: 4003 - 5382 (-)
Gene ID: HRGMv2_0621_17_5
Type:
Location: 5539 - 5781 (+)
Type:
Location: 5539 - 5781 (+)
Gene ID: HRGMv2_0621_17_6
Type: pfam
Location: 5671 - 6480 (-)
Type: pfam
Location: 5671 - 6480 (-)
Gene ID: HRGMv2_0621_17_7
Type: CAZyme
Location: 6679 - 8358 (-)
Type: CAZyme
Location: 6679 - 8358 (-)
Gene ID: HRGMv2_0621_17_8
Type: pfam
Location: 8480 - 9160 (-)
Type: pfam
Location: 8480 - 9160 (-)
Gene ID: HRGMv2_0621_17_9
Type: TC
Location: 9369 - 11162 (-)
Type: TC
Location: 9369 - 11162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter aliiformigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0621_17_4 | vegetarian > omnivore | 2.09279 | 0.01684 |
| HRGMv2_0621_17_4 | vegetarian > vegan | 1.58802 | 0.04112 |