Cluster: HRGMv2_0621_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0621
- CGC Family ID: CGCFAM_01119
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0621_9 | HRGMv2_0621_9_63 | 69071 | 69484 | + | 2.A.53.3.4 |
| NULL(UNKNOWN) | HRGMv2_0621_9 | HRGMv2_0621_9_64 | 69644 | 70894 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0621_9 | HRGMv2_0621_9_65 | 71102 | 72097 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0621_9 | HRGMv2_0621_9_66 | 72128 | 73144 | - | GT2 |
| pfam | HRGMv2_0621_9 | HRGMv2_0621_9_67 | 73145 | 74137 | - | Stealth_CR2 |
| TC | HRGMv2_0621_9 | HRGMv2_0621_9_68 | 74842 | 75258 | + | 2.A.7.2.1 |
Gene ID: HRGMv2_0621_9_63
Type: TC
Location: 69071 - 69484 (+)
Type: TC
Location: 69071 - 69484 (+)
Gene ID: HRGMv2_0621_9_64
Type:
Location: 69644 - 70894 (-)
Type:
Location: 69644 - 70894 (-)
Gene ID: HRGMv2_0621_9_65
Type:
Location: 71102 - 72097 (-)
Type:
Location: 71102 - 72097 (-)
Gene ID: HRGMv2_0621_9_66
Type: CAZyme
Location: 72128 - 73144 (-)
Type: CAZyme
Location: 72128 - 73144 (-)
Gene ID: HRGMv2_0621_9_67
Type: pfam
Location: 73145 - 74137 (-)
Type: pfam
Location: 73145 - 74137 (-)
Gene ID: HRGMv2_0621_9_68
Type: TC
Location: 74842 - 75258 (+)
Type: TC
Location: 74842 - 75258 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter aliiformigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0621_9_63 | vegetarian > vegan | 1.71738 | 0.04112 |