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Cluster: HRGMv2_0620_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0620_29 HRGMv2_0620_29_62 61613 62728 - GT104
pfam HRGMv2_0620_29 HRGMv2_0620_29_63 62786 64654 + HHH | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
TC HRGMv2_0620_29 HRGMv2_0620_29_64 64644 65246 + 4.F.1.1.8
TC HRGMv2_0620_29 HRGMv2_0620_29_65 65433 66971 + 2.A.35.2.1
pfam HRGMv2_0620_29 HRGMv2_0620_29_66 67079 67468 - BOF
NULL(UNKNOWN) HRGMv2_0620_29 HRGMv2_0620_29_67 68205 68333 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0620_29 HRGMv2_0620_29_68 68743 70239 + 2.A.21.2.1
NULL(UNKNOWN) HRGMv2_0620_29 HRGMv2_0620_29_69 70371 70523 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0620_29 HRGMv2_0620_29_70 70890 71651 + 9.A.5.4.1
TC HRGMv2_0620_29 HRGMv2_0620_29_71 71654 72121 + 9.B.156.1.3
Gene ID: HRGMv2_0620_29_62
Type: CAZyme
Location: 61613 - 62728 (-)
Gene ID: HRGMv2_0620_29_63
Type: pfam
Location: 62786 - 64654 (+)
Gene ID: HRGMv2_0620_29_64
Type: TC
Location: 64644 - 65246 (+)
Gene ID: HRGMv2_0620_29_65
Type: TC
Location: 65433 - 66971 (+)
Gene ID: HRGMv2_0620_29_66
Type: pfam
Location: 67079 - 67468 (-)
Gene ID: HRGMv2_0620_29_67
Type:
Location: 68205 - 68333 (-)
Gene ID: HRGMv2_0620_29_68
Type: TC
Location: 68743 - 70239 (+)
Gene ID: HRGMv2_0620_29_69
Type:
Location: 70371 - 70523 (+)
Gene ID: HRGMv2_0620_29_70
Type: TC
Location: 70890 - 71651 (+)
Gene ID: HRGMv2_0620_29_71
Type: TC
Location: 71654 - 72121 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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