Cluster: HRGMv2_0612_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0612_67 | HRGMv2_0612_67_12 | 7676 | 9184 | + | GH77 |
| pfam | HRGMv2_0612_67 | HRGMv2_0612_67_13 | 9253 | 10299 | + | Queuosine_synth |
| pfam | HRGMv2_0612_67 | HRGMv2_0612_67_14 | 10336 | 11463 | + | TGT |
| TC | HRGMv2_0612_67 | HRGMv2_0612_67_15 | 11651 | 11977 | + | 3.A.5.1.1 |
| TC | HRGMv2_0612_67 | HRGMv2_0612_67_16 | 12046 | 13917 | + | 2.A.6.4.1 |
| TC | HRGMv2_0612_67 | HRGMv2_0612_67_17 | 13948 | 14889 | + | 2.A.6.4.1 |
Gene ID: HRGMv2_0612_67_12
Type: CAZyme
Location: 7676 - 9184 (+)
Type: CAZyme
Location: 7676 - 9184 (+)
Gene ID: HRGMv2_0612_67_13
Type: pfam
Location: 9253 - 10299 (+)
Type: pfam
Location: 9253 - 10299 (+)
Gene ID: HRGMv2_0612_67_14
Type: pfam
Location: 10336 - 11463 (+)
Type: pfam
Location: 10336 - 11463 (+)
Gene ID: HRGMv2_0612_67_15
Type: TC
Location: 11651 - 11977 (+)
Type: TC
Location: 11651 - 11977 (+)
Gene ID: HRGMv2_0612_67_16
Type: TC
Location: 12046 - 13917 (+)
Type: TC
Location: 12046 - 13917 (+)
Gene ID: HRGMv2_0612_67_17
Type: TC
Location: 13948 - 14889 (+)
Type: TC
Location: 13948 - 14889 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.