Cluster: HRGMv2_0612_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0612_60 | HRGMv2_0612_60_65 | 66089 | 67156 | + | GH3 |
| pfam | HRGMv2_0612_60 | HRGMv2_0612_60_66 | 67165 | 69063 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | HRGMv2_0612_60 | HRGMv2_0612_60_67 | 69100 | 69699 | + | 4.F.1.1.8 |
Gene ID: HRGMv2_0612_60_65
Type: CAZyme
Location: 66089 - 67156 (+)
Type: CAZyme
Location: 66089 - 67156 (+)
Gene ID: HRGMv2_0612_60_66
Type: pfam
Location: 67165 - 69063 (+)
Type: pfam
Location: 67165 - 69063 (+)
Gene ID: HRGMv2_0612_60_67
Type: TC
Location: 69100 - 69699 (+)
Type: TC
Location: 69100 - 69699 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.