Cluster: HRGMv2_0612_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- CGC Family ID: CGCFAM_00013
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0612_37 | HRGMv2_0612_37_61 | 65473 | 66642 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0612_37 | HRGMv2_0612_37_62 | 66644 | 67849 | + | Mur_ligase_M | MurD-like_N |
| NULL(UNKNOWN) | HRGMv2_0612_37 | HRGMv2_0612_37_63 | 67878 | 68126 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0612_37 | HRGMv2_0612_37_64 | 68123 | 69361 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0612_37 | HRGMv2_0612_37_65 | 69348 | 70430 | + | GT28 |
Gene ID: HRGMv2_0612_37_61
Type: TC
Location: 65473 - 66642 (+)
Type: TC
Location: 65473 - 66642 (+)
Gene ID: HRGMv2_0612_37_62
Type: pfam
Location: 66644 - 67849 (+)
Type: pfam
Location: 66644 - 67849 (+)
Gene ID: HRGMv2_0612_37_63
Type:
Location: 67878 - 68126 (+)
Type:
Location: 67878 - 68126 (+)
Gene ID: HRGMv2_0612_37_64
Type: TC
Location: 68123 - 69361 (+)
Type: TC
Location: 68123 - 69361 (+)
Gene ID: HRGMv2_0612_37_65
Type: CAZyme
Location: 69348 - 70430 (+)
Type: CAZyme
Location: 69348 - 70430 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.