Cluster: HRGMv2_0612_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0612_37 | HRGMv2_0612_37_49 | 52293 | 53552 | - | 9.B.1.1.2 |
| pfam | HRGMv2_0612_37 | HRGMv2_0612_37_50 | 53601 | 54200 | + | RNase_T |
| STP | HRGMv2_0612_37 | HRGMv2_0612_37_51 | 54235 | 54912 | + | HATPase_c |
| CAZyme | HRGMv2_0612_37 | HRGMv2_0612_37_52 | 54920 | 56155 | - | GT30 |
Gene ID: HRGMv2_0612_37_49
Type: TC
Location: 52293 - 53552 (-)
Type: TC
Location: 52293 - 53552 (-)
Gene ID: HRGMv2_0612_37_50
Type: pfam
Location: 53601 - 54200 (+)
Type: pfam
Location: 53601 - 54200 (+)
Gene ID: HRGMv2_0612_37_51
Type: STP
Location: 54235 - 54912 (+)
Type: STP
Location: 54235 - 54912 (+)
Gene ID: HRGMv2_0612_37_52
Type: CAZyme
Location: 54920 - 56155 (-)
Type: CAZyme
Location: 54920 - 56155 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.