Cluster: HRGMv2_0612_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0612_20 | HRGMv2_0612_20_2 | 680 | 2095 | - | AA7 |
| pfam | HRGMv2_0612_20 | HRGMv2_0612_20_3 | 2262 | 3581 | + | Virul_fac_BrkB |
| TC | HRGMv2_0612_20 | HRGMv2_0612_20_4 | 3741 | 5366 | + | 2.A.1.30.1 |
Gene ID: HRGMv2_0612_20_2
Type: CAZyme
Location: 680 - 2095 (-)
Type: CAZyme
Location: 680 - 2095 (-)
Gene ID: HRGMv2_0612_20_3
Type: pfam
Location: 2262 - 3581 (+)
Type: pfam
Location: 2262 - 3581 (+)
Gene ID: HRGMv2_0612_20_4
Type: TC
Location: 3741 - 5366 (+)
Type: TC
Location: 3741 - 5366 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.