Cluster: HRGMv2_0612_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0612_96 | HRGMv2_0612_96_1 | 3 | 1151 | + | 2.A.37.1.5 |
| STP | HRGMv2_0612_96 | HRGMv2_0612_96_2 | 1365 | 2042 | + | DeoRC |
| CAZyme | HRGMv2_0612_96 | HRGMv2_0612_96_3 | 2174 | 3835 | + | GH23 |
| pfam | HRGMv2_0612_96 | HRGMv2_0612_96_4 | 4021 | 4824 | + | adh_short | adh_short_C2 |
| TC | HRGMv2_0612_96 | HRGMv2_0612_96_5 | 5096 | 6496 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_0612_96_1
Type: TC
Location: 3 - 1151 (+)
Type: TC
Location: 3 - 1151 (+)
Gene ID: HRGMv2_0612_96_2
Type: STP
Location: 1365 - 2042 (+)
Type: STP
Location: 1365 - 2042 (+)
Gene ID: HRGMv2_0612_96_3
Type: CAZyme
Location: 2174 - 3835 (+)
Type: CAZyme
Location: 2174 - 3835 (+)
Gene ID: HRGMv2_0612_96_4
Type: pfam
Location: 4021 - 4824 (+)
Type: pfam
Location: 4021 - 4824 (+)
Gene ID: HRGMv2_0612_96_5
Type: TC
Location: 5096 - 6496 (+)
Type: TC
Location: 5096 - 6496 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.