Cluster: HRGMv2_0612_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0612_73 | HRGMv2_0612_73_18 | 20207 | 21379 | + | GH102 |
| pfam | HRGMv2_0612_73 | HRGMv2_0612_73_19 | 21387 | 21824 | - | Usp |
| pfam | HRGMv2_0612_73 | HRGMv2_0612_73_20 | 21975 | 22241 | + | DUF4404 |
| TC | HRGMv2_0612_73 | HRGMv2_0612_73_21 | 22627 | 24660 | + | 3.A.11.3.1 |
| CAZyme | HRGMv2_0612_73 | HRGMv2_0612_73_22 | 24676 | 25563 | - | GH23 |
Gene ID: HRGMv2_0612_73_18
Type: CAZyme
Location: 20207 - 21379 (+)
Type: CAZyme
Location: 20207 - 21379 (+)
Gene ID: HRGMv2_0612_73_19
Type: pfam
Location: 21387 - 21824 (-)
Type: pfam
Location: 21387 - 21824 (-)
Gene ID: HRGMv2_0612_73_20
Type: pfam
Location: 21975 - 22241 (+)
Type: pfam
Location: 21975 - 22241 (+)
Gene ID: HRGMv2_0612_73_21
Type: TC
Location: 22627 - 24660 (+)
Type: TC
Location: 22627 - 24660 (+)
Gene ID: HRGMv2_0612_73_22
Type: CAZyme
Location: 24676 - 25563 (-)
Type: CAZyme
Location: 24676 - 25563 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.