Cluster: HRGMv2_0609_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0609
- CGC Family ID: CGCFAM_00849
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0609_3 | HRGMv2_0609_3_11 | 12598 | 13557 | - | CE4 |
| TF | HRGMv2_0609_3 | HRGMv2_0609_3_12 | 13575 | 14264 | - | GntR |
| TC | HRGMv2_0609_3 | HRGMv2_0609_3_13 | 14347 | 14697 | + | 9.B.35.1.2 |
| NULL(UNKNOWN) | HRGMv2_0609_3 | HRGMv2_0609_3_14 | 14822 | 15322 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0609_3 | HRGMv2_0609_3_15 | 15405 | 16235 | + | XdhC_CoxI | XdhC_C |
| TC | HRGMv2_0609_3 | HRGMv2_0609_3_16 | 16454 | 17719 | + | 9.B.43.1.1 |
Gene ID: HRGMv2_0609_3_11
Type: CAZyme
Location: 12598 - 13557 (-)
Type: CAZyme
Location: 12598 - 13557 (-)
Gene ID: HRGMv2_0609_3_12
Type: TF
Location: 13575 - 14264 (-)
Type: TF
Location: 13575 - 14264 (-)
Gene ID: HRGMv2_0609_3_13
Type: TC
Location: 14347 - 14697 (+)
Type: TC
Location: 14347 - 14697 (+)
Gene ID: HRGMv2_0609_3_14
Type:
Location: 14822 - 15322 (-)
Type:
Location: 14822 - 15322 (-)
Gene ID: HRGMv2_0609_3_15
Type: pfam
Location: 15405 - 16235 (+)
Type: pfam
Location: 15405 - 16235 (+)
Gene ID: HRGMv2_0609_3_16
Type: TC
Location: 16454 - 17719 (+)
Type: TC
Location: 16454 - 17719 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Comamonas
Species
Comamonas kerstersii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.