dbCAN Logo

Cluster: HRGMv2_0601_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0601_26 HRGMv2_0601_26_29 36295 38262 - 9.B.14.1.7
pfam HRGMv2_0601_26 HRGMv2_0601_26_30 38462 38980 - CcmE
pfam HRGMv2_0601_26 HRGMv2_0601_26_31 38982 39170 - CcmD
TC HRGMv2_0601_26 HRGMv2_0601_26_32 39167 39895 - 9.B.14.2.3
TC HRGMv2_0601_26 HRGMv2_0601_26_33 39969 40637 - 3.A.1.107.4
TC HRGMv2_0601_26 HRGMv2_0601_26_34 40655 41365 - 3.A.1.107.3
NULL(UNKNOWN) HRGMv2_0601_26 HRGMv2_0601_26_35 41787 42191 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0601_26 HRGMv2_0601_26_36 42219 44300 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
TC HRGMv2_0601_26 HRGMv2_0601_26_37 44297 44944 + 4.F.1.1.8
NULL(UNKNOWN) HRGMv2_0601_26 HRGMv2_0601_26_38 44991 45626 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0601_26 HRGMv2_0601_26_39 45746 49468 + DUF2157 | GDYXXLXY
CAZyme HRGMv2_0601_26 HRGMv2_0601_26_40 49510 50706 + GT104
pfam HRGMv2_0601_26 HRGMv2_0601_26_41 51004 51561 + EFP | EFP_N | Elong-fact-P_C
pfam HRGMv2_0601_26 HRGMv2_0601_26_42 51735 52151 + dCMP_cyt_deam_1 | MafB19-deam
TC HRGMv2_0601_26 HRGMv2_0601_26_43 52200 53570 - 2.A.1.60.3
Gene ID: HRGMv2_0601_26_29
Type: TC
Location: 36295 - 38262 (-)
Gene ID: HRGMv2_0601_26_30
Type: pfam
Location: 38462 - 38980 (-)
Gene ID: HRGMv2_0601_26_31
Type: pfam
Location: 38982 - 39170 (-)
Gene ID: HRGMv2_0601_26_32
Type: TC
Location: 39167 - 39895 (-)
Gene ID: HRGMv2_0601_26_33
Type: TC
Location: 39969 - 40637 (-)
Gene ID: HRGMv2_0601_26_34
Type: TC
Location: 40655 - 41365 (-)
Gene ID: HRGMv2_0601_26_35
Type:
Location: 41787 - 42191 (+)
Gene ID: HRGMv2_0601_26_36
Type: pfam
Location: 42219 - 44300 (+)
Gene ID: HRGMv2_0601_26_37
Type: TC
Location: 44297 - 44944 (+)
Gene ID: HRGMv2_0601_26_38
Type:
Location: 44991 - 45626 (+)
Gene ID: HRGMv2_0601_26_39
Type: pfam
Location: 45746 - 49468 (+)
Gene ID: HRGMv2_0601_26_40
Type: CAZyme
Location: 49510 - 50706 (+)
Gene ID: HRGMv2_0601_26_41
Type: pfam
Location: 51004 - 51561 (+)
Gene ID: HRGMv2_0601_26_42
Type: pfam
Location: 51735 - 52151 (+)
Gene ID: HRGMv2_0601_26_43
Type: TC
Location: 52200 - 53570 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0601_26_42 vegetarian > omnivore 1.32379 0.02320

🧭 Explore Read Mapping of CGC

← Back to Cluster List