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Cluster: HRGMv2_0595_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0595_8 HRGMv2_0595_8_51 57005 58192 - GT104
TC HRGMv2_0595_8 HRGMv2_0595_8_52 58264 58863 - 4.F.1.1.8
pfam HRGMv2_0595_8 HRGMv2_0595_8_53 58979 61069 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
NULL(UNKNOWN) HRGMv2_0595_8 HRGMv2_0595_8_54 61095 61496 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0595_8 HRGMv2_0595_8_55 61980 62690 + 3.A.1.107.3
TC HRGMv2_0595_8 HRGMv2_0595_8_56 62702 63370 + 3.A.1.107.4
TC HRGMv2_0595_8 HRGMv2_0595_8_57 63434 64159 + 9.B.14.2.4
pfam HRGMv2_0595_8 HRGMv2_0595_8_58 64156 64341 + CcmD
pfam HRGMv2_0595_8 HRGMv2_0595_8_59 64354 64845 + CcmE
TC HRGMv2_0595_8 HRGMv2_0595_8_60 65038 66999 + 9.B.14.1.7
Gene ID: HRGMv2_0595_8_51
Type: CAZyme
Location: 57005 - 58192 (-)
Gene ID: HRGMv2_0595_8_52
Type: TC
Location: 58264 - 58863 (-)
Gene ID: HRGMv2_0595_8_53
Type: pfam
Location: 58979 - 61069 (-)
Gene ID: HRGMv2_0595_8_54
Type:
Location: 61095 - 61496 (-)
Gene ID: HRGMv2_0595_8_55
Type: TC
Location: 61980 - 62690 (+)
Gene ID: HRGMv2_0595_8_56
Type: TC
Location: 62702 - 63370 (+)
Gene ID: HRGMv2_0595_8_57
Type: TC
Location: 63434 - 64159 (+)
Gene ID: HRGMv2_0595_8_58
Type: pfam
Location: 64156 - 64341 (+)
Gene ID: HRGMv2_0595_8_59
Type: pfam
Location: 64354 - 64845 (+)
Gene ID: HRGMv2_0595_8_60
Type: TC
Location: 65038 - 66999 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0595_8_55 vegan > omnivore 1.11111 0.02773
HRGMv2_0595_8_56 vegan > omnivore 1.90143 0.02773
HRGMv2_0595_8_56 vegetarian > omnivore 3.22844 0.02132

🧭 Explore Read Mapping of CGC

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