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Cluster: HRGMv2_0579_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0579_1 HRGMv2_0579_1_20 27264 28229 - GT4
TC HRGMv2_0579_1 HRGMv2_0579_1_21 28383 30134 - 3.A.1.106.1
CAZyme HRGMv2_0579_1 HRGMv2_0579_1_22 30237 31178 + GT9
pfam HRGMv2_0579_1 HRGMv2_0579_1_23 31184 32839 - SMC_N | AAA_23
CAZyme HRGMv2_0579_1 HRGMv2_0579_1_24 32866 33633 - GT25
pfam HRGMv2_0579_1 HRGMv2_0579_1_25 33666 34538 - NAD_kinase | NAD_kinase_C
pfam HRGMv2_0579_1 HRGMv2_0579_1_26 34645 35430 - adh_short | adh_short_C2
CAZyme HRGMv2_0579_1 HRGMv2_0579_1_27 35544 37616 - GH23
Gene ID: HRGMv2_0579_1_20
Type: CAZyme
Location: 27264 - 28229 (-)
Gene ID: HRGMv2_0579_1_21
Type: TC
Location: 28383 - 30134 (-)
Gene ID: HRGMv2_0579_1_22
Type: CAZyme
Location: 30237 - 31178 (+)
Gene ID: HRGMv2_0579_1_23
Type: pfam
Location: 31184 - 32839 (-)
Gene ID: HRGMv2_0579_1_24
Type: CAZyme
Location: 32866 - 33633 (-)
Gene ID: HRGMv2_0579_1_25
Type: pfam
Location: 33666 - 34538 (-)
Gene ID: HRGMv2_0579_1_26
Type: pfam
Location: 34645 - 35430 (-)
Gene ID: HRGMv2_0579_1_27
Type: CAZyme
Location: 35544 - 37616 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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