Cluster: HRGMv2_0566_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0566
- CGC Family ID: CGCFAM_00429
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0566_60 | HRGMv2_0566_60_47 | 61861 | 62901 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0566_60 | HRGMv2_0566_60_48 | 63062 | 63574 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0566_60 | HRGMv2_0566_60_49 | 63710 | 64900 | + | NAPRTase | NAPRTase_N |
| TC | HRGMv2_0566_60 | HRGMv2_0566_60_50 | 65138 | 66553 | + | 2.A.111.1.2 |
| TC | HRGMv2_0566_60 | HRGMv2_0566_60_51 | 66663 | 68222 | + | 3.A.1.17.10 |
| pfam | HRGMv2_0566_60 | HRGMv2_0566_60_52 | 68350 | 69291 | + | NMT1 | Phosphonate-bd | NMT1_2 |
| NULL(UNKNOWN) | HRGMv2_0566_60 | HRGMv2_0566_60_53 | 69659 | 70357 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0566_60 | HRGMv2_0566_60_54 | 70426 | 70941 | + | 2.A.61.1.3 |
| TC | HRGMv2_0566_60 | HRGMv2_0566_60_55 | 71068 | 72228 | + | 1.B.1.4.1 |
Gene ID: HRGMv2_0566_60_47
Type: CAZyme
Location: 61861 - 62901 (+)
Type: CAZyme
Location: 61861 - 62901 (+)
Gene ID: HRGMv2_0566_60_48
Type:
Location: 63062 - 63574 (+)
Type:
Location: 63062 - 63574 (+)
Gene ID: HRGMv2_0566_60_49
Type: pfam
Location: 63710 - 64900 (+)
Type: pfam
Location: 63710 - 64900 (+)
Gene ID: HRGMv2_0566_60_50
Type: TC
Location: 65138 - 66553 (+)
Type: TC
Location: 65138 - 66553 (+)
Gene ID: HRGMv2_0566_60_51
Type: TC
Location: 66663 - 68222 (+)
Type: TC
Location: 66663 - 68222 (+)
Gene ID: HRGMv2_0566_60_52
Type: pfam
Location: 68350 - 69291 (+)
Type: pfam
Location: 68350 - 69291 (+)
Gene ID: HRGMv2_0566_60_53
Type:
Location: 69659 - 70357 (+)
Type:
Location: 69659 - 70357 (+)
Gene ID: HRGMv2_0566_60_54
Type: TC
Location: 70426 - 70941 (+)
Type: TC
Location: 70426 - 70941 (+)
Gene ID: HRGMv2_0566_60_55
Type: TC
Location: 71068 - 72228 (+)
Type: TC
Location: 71068 - 72228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0566_60_47 | vegetarian > omnivore | 1.08845 | 0.00667 |
| HRGMv2_0566_60_47 | vegetarian > vegan | 1.29785 | 0.01062 |
| HRGMv2_0566_60_48 | vegetarian > omnivore | 1.73074 | 0.00667 |
| HRGMv2_0566_60_48 | vegetarian > vegan | 1.74968 | 0.01062 |
| HRGMv2_0566_60_50 | vegan > omnivore | 1.15311 | 0.03830 |
| HRGMv2_0566_60_50 | vegetarian > omnivore | 1.85053 | 0.00667 |
| HRGMv2_0566_60_52 | vegetarian > vegan | 1.44473 | 0.01062 |
| HRGMv2_0566_60_55 | vegetarian > vegan | 1.62305 | 0.01062 |