Cluster: HRGMv2_0566_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0566
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0566_36 | HRGMv2_0566_36_40 | 44345 | 45394 | - | 2.A.7.3.19 |
| CAZyme | HRGMv2_0566_36 | HRGMv2_0566_36_41 | 45938 | 47206 | - | GH103 |
| pfam | HRGMv2_0566_36 | HRGMv2_0566_36_42 | 47282 | 48364 | + | Hist_deacetyl |
| TC | HRGMv2_0566_36 | HRGMv2_0566_36_43 | 48385 | 49677 | + | 2.A.1.24.3 |
Gene ID: HRGMv2_0566_36_40
Type: TC
Location: 44345 - 45394 (-)
Type: TC
Location: 44345 - 45394 (-)
Gene ID: HRGMv2_0566_36_41
Type: CAZyme
Location: 45938 - 47206 (-)
Type: CAZyme
Location: 45938 - 47206 (-)
Gene ID: HRGMv2_0566_36_42
Type: pfam
Location: 47282 - 48364 (+)
Type: pfam
Location: 47282 - 48364 (+)
Gene ID: HRGMv2_0566_36_43
Type: TC
Location: 48385 - 49677 (+)
Type: TC
Location: 48385 - 49677 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0566_36_40 | vegetarian > omnivore | 1.15235 | 0.00667 |
| HRGMv2_0566_36_41 | vegetarian > omnivore | 1.04643 | 0.00667 |
| HRGMv2_0566_36_42 | vegetarian > omnivore | 1.65223 | 0.00667 |
| HRGMv2_0566_36_42 | vegetarian > vegan | 1.08713 | 0.01062 |
| HRGMv2_0566_36_43 | vegetarian > omnivore | 1.05018 | 0.00667 |
| HRGMv2_0566_36_43 | vegetarian > vegan | 1.45552 | 0.01062 |