Cluster: HRGMv2_0566_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0566
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0566_4 | HRGMv2_0566_4_49 | 50991 | 52115 | - | GT104 |
| pfam | HRGMv2_0566_4 | HRGMv2_0566_4_50 | 52112 | 54493 | - | DUF2157 | GDYXXLXY |
| TC | HRGMv2_0566_4 | HRGMv2_0566_4_51 | 54951 | 55595 | - | 4.F.1.1.8 |
| pfam | HRGMv2_0566_4 | HRGMv2_0566_4_52 | 55636 | 57582 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH |
| NULL(UNKNOWN) | HRGMv2_0566_4 | HRGMv2_0566_4_53 | 57604 | 58005 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0566_4 | HRGMv2_0566_4_54 | 58352 | 59071 | + | 3.A.1.107.3 |
| TC | HRGMv2_0566_4 | HRGMv2_0566_4_55 | 59090 | 59758 | + | 3.A.1.107.4 |
| TC | HRGMv2_0566_4 | HRGMv2_0566_4_56 | 59822 | 60550 | + | 9.B.14.2.4 |
| pfam | HRGMv2_0566_4 | HRGMv2_0566_4_57 | 60547 | 60735 | + | CcmD |
| pfam | HRGMv2_0566_4 | HRGMv2_0566_4_58 | 60766 | 61272 | + | CcmE |
| TC | HRGMv2_0566_4 | HRGMv2_0566_4_59 | 61583 | 63565 | + | 9.B.14.1.7 |
Gene ID: HRGMv2_0566_4_49
Type: CAZyme
Location: 50991 - 52115 (-)
Type: CAZyme
Location: 50991 - 52115 (-)
Gene ID: HRGMv2_0566_4_50
Type: pfam
Location: 52112 - 54493 (-)
Type: pfam
Location: 52112 - 54493 (-)
Gene ID: HRGMv2_0566_4_51
Type: TC
Location: 54951 - 55595 (-)
Type: TC
Location: 54951 - 55595 (-)
Gene ID: HRGMv2_0566_4_52
Type: pfam
Location: 55636 - 57582 (-)
Type: pfam
Location: 55636 - 57582 (-)
Gene ID: HRGMv2_0566_4_53
Type:
Location: 57604 - 58005 (-)
Type:
Location: 57604 - 58005 (-)
Gene ID: HRGMv2_0566_4_54
Type: TC
Location: 58352 - 59071 (+)
Type: TC
Location: 58352 - 59071 (+)
Gene ID: HRGMv2_0566_4_55
Type: TC
Location: 59090 - 59758 (+)
Type: TC
Location: 59090 - 59758 (+)
Gene ID: HRGMv2_0566_4_56
Type: TC
Location: 59822 - 60550 (+)
Type: TC
Location: 59822 - 60550 (+)
Gene ID: HRGMv2_0566_4_57
Type: pfam
Location: 60547 - 60735 (+)
Type: pfam
Location: 60547 - 60735 (+)
Gene ID: HRGMv2_0566_4_58
Type: pfam
Location: 60766 - 61272 (+)
Type: pfam
Location: 60766 - 61272 (+)
Gene ID: HRGMv2_0566_4_59
Type: TC
Location: 61583 - 63565 (+)
Type: TC
Location: 61583 - 63565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0566_4_50 | vegetarian > omnivore | 1.42974 | 0.00667 |
| HRGMv2_0566_4_50 | vegetarian > vegan | 1.46273 | 0.01062 |
| HRGMv2_0566_4_51 | vegetarian > vegan | 1.32336 | 0.01062 |
| HRGMv2_0566_4_53 | vegetarian > omnivore | 1.55368 | 0.00667 |
| HRGMv2_0566_4_58 | vegan > omnivore | 1.35075 | 0.03830 |