Cluster: HRGMv2_0565_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0565
- CGC Family ID: CGCFAM_00469
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0565_74 | HRGMv2_0565_74_6 | 6413 | 7462 | - | 2.A.7.3.19 |
| CAZyme | HRGMv2_0565_74 | HRGMv2_0565_74_7 | 8003 | 9262 | - | GH103 |
| pfam | HRGMv2_0565_74 | HRGMv2_0565_74_8 | 9457 | 10419 | + | Hist_deacetyl |
| TC | HRGMv2_0565_74 | HRGMv2_0565_74_9 | 10440 | 11732 | + | 2.A.1.24.3 |
Gene ID: HRGMv2_0565_74_6
Type: TC
Location: 6413 - 7462 (-)
Type: TC
Location: 6413 - 7462 (-)
Gene ID: HRGMv2_0565_74_7
Type: CAZyme
Location: 8003 - 9262 (-)
Type: CAZyme
Location: 8003 - 9262 (-)
Gene ID: HRGMv2_0565_74_8
Type: pfam
Location: 9457 - 10419 (+)
Type: pfam
Location: 9457 - 10419 (+)
Gene ID: HRGMv2_0565_74_9
Type: TC
Location: 10440 - 11732 (+)
Type: TC
Location: 10440 - 11732 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella seckii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0565_74_6 | vegan > omnivore | 1.07921 | 0.02034 |
| HRGMv2_0565_74_8 | vegetarian > omnivore | 1.71435 | 0.01147 |