Cluster: HRGMv2_0565_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0565
- CGC Family ID: CGCFAM_09729
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0565_35 | HRGMv2_0565_35_7 | 7023 | 8366 | + | 2.A.6.1.4 |
| TC | HRGMv2_0565_35 | HRGMv2_0565_35_8 | 8363 | 10303 | + | 2.A.6.1.4 |
| TC | HRGMv2_0565_35 | HRGMv2_0565_35_9 | 10323 | 11498 | + | 2.A.6.1.3 |
| TC | HRGMv2_0565_35 | HRGMv2_0565_35_10 | 11630 | 12253 | + | 1.A.62.2.3 |
| TC | HRGMv2_0565_35 | HRGMv2_0565_35_11 | 12564 | 14612 | - | 2.A.37.1.5 |
| CAZyme | HRGMv2_0565_35 | HRGMv2_0565_35_12 | 14856 | 15938 | + | GT2 |
Gene ID: HRGMv2_0565_35_7
Type: TC
Location: 7023 - 8366 (+)
Type: TC
Location: 7023 - 8366 (+)
Gene ID: HRGMv2_0565_35_8
Type: TC
Location: 8363 - 10303 (+)
Type: TC
Location: 8363 - 10303 (+)
Gene ID: HRGMv2_0565_35_9
Type: TC
Location: 10323 - 11498 (+)
Type: TC
Location: 10323 - 11498 (+)
Gene ID: HRGMv2_0565_35_10
Type: TC
Location: 11630 - 12253 (+)
Type: TC
Location: 11630 - 12253 (+)
Gene ID: HRGMv2_0565_35_11
Type: TC
Location: 12564 - 14612 (-)
Type: TC
Location: 12564 - 14612 (-)
Gene ID: HRGMv2_0565_35_12
Type: CAZyme
Location: 14856 - 15938 (+)
Type: CAZyme
Location: 14856 - 15938 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella seckii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0565_35_11 | vegan > omnivore | 1.45203 | 0.02034 |