Cluster: HRGMv2_0565_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0565
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0565_5 | HRGMv2_0565_5_44 | 45736 | 46890 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0565_5 | HRGMv2_0565_5_45 | 46914 | 48413 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_0565_5 | HRGMv2_0565_5_46 | 48410 | 49579 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0565_5 | HRGMv2_0565_5_47 | 49576 | 50697 | + | GT28 |
Gene ID: HRGMv2_0565_5_44
Type: TC
Location: 45736 - 46890 (+)
Type: TC
Location: 45736 - 46890 (+)
Gene ID: HRGMv2_0565_5_45
Type: pfam
Location: 46914 - 48413 (+)
Type: pfam
Location: 46914 - 48413 (+)
Gene ID: HRGMv2_0565_5_46
Type: TC
Location: 48410 - 49579 (+)
Type: TC
Location: 48410 - 49579 (+)
Gene ID: HRGMv2_0565_5_47
Type: CAZyme
Location: 49576 - 50697 (+)
Type: CAZyme
Location: 49576 - 50697 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Species
Sutterella seckii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0565_5_45 | vegan > omnivore | 1.08609 | 0.02034 |
| HRGMv2_0565_5_45 | vegetarian > omnivore | 2.58906 | 0.01144 |
| HRGMv2_0565_5_46 | vegan > omnivore | 1.24774 | 0.02034 |
| HRGMv2_0565_5_46 | vegetarian > omnivore | 1.05057 | 0.01147 |