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Cluster: HRGMv2_0565_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0565_2 HRGMv2_0565_2_16 22115 23266 - 1.B.1.4.1
pfam HRGMv2_0565_2 HRGMv2_0565_2_17 23750 24691 - NMT1 | Phosphonate-bd | NMT1_2
TC HRGMv2_0565_2 HRGMv2_0565_2_18 24820 26379 - 3.A.1.17.10
TC HRGMv2_0565_2 HRGMv2_0565_2_19 26488 27903 - 2.A.111.1.2
pfam HRGMv2_0565_2 HRGMv2_0565_2_20 28140 29330 - NAPRTase | NAPRTase_N
NULL(UNKNOWN) HRGMv2_0565_2 HRGMv2_0565_2_21 29485 30000 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0565_2 HRGMv2_0565_2_22 30164 31204 - GH3
Gene ID: HRGMv2_0565_2_16
Type: TC
Location: 22115 - 23266 (-)
Gene ID: HRGMv2_0565_2_17
Type: pfam
Location: 23750 - 24691 (-)
Gene ID: HRGMv2_0565_2_18
Type: TC
Location: 24820 - 26379 (-)
Gene ID: HRGMv2_0565_2_19
Type: TC
Location: 26488 - 27903 (-)
Gene ID: HRGMv2_0565_2_20
Type: pfam
Location: 28140 - 29330 (-)
Gene ID: HRGMv2_0565_2_21
Type:
Location: 29485 - 30000 (-)
Gene ID: HRGMv2_0565_2_22
Type: CAZyme
Location: 30164 - 31204 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0565_2_21 vegetarian > omnivore 1.42420 0.01147
HRGMv2_0565_2_22 vegetarian > omnivore 1.03237 0.01147

🧭 Explore Read Mapping of CGC

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