Cluster: HRGMv2_0560_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0560
- CGC Family ID: CGCFAM_02253
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0560_5 | HRGMv2_0560_5_68 | 72759 | 74540 | - | 3.A.1.106.1 |
| CAZyme | HRGMv2_0560_5 | HRGMv2_0560_5_69 | 74723 | 75655 | + | GT9 |
| pfam | HRGMv2_0560_5 | HRGMv2_0560_5_70 | 75677 | 79102 | - | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| TC | HRGMv2_0560_5 | HRGMv2_0560_5_71 | 79168 | 80832 | - | 3.A.1.120.6 |
| CAZyme | HRGMv2_0560_5 | HRGMv2_0560_5_72 | 80983 | 82482 | + | GH23 |
Gene ID: HRGMv2_0560_5_68
Type: TC
Location: 72759 - 74540 (-)
Type: TC
Location: 72759 - 74540 (-)
Gene ID: HRGMv2_0560_5_69
Type: CAZyme
Location: 74723 - 75655 (+)
Type: CAZyme
Location: 74723 - 75655 (+)
Gene ID: HRGMv2_0560_5_70
Type: pfam
Location: 75677 - 79102 (-)
Type: pfam
Location: 75677 - 79102 (-)
Gene ID: HRGMv2_0560_5_71
Type: TC
Location: 79168 - 80832 (-)
Type: TC
Location: 79168 - 80832 (-)
Gene ID: HRGMv2_0560_5_72
Type: CAZyme
Location: 80983 - 82482 (+)
Type: CAZyme
Location: 80983 - 82482 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Duodenibacillus
Species
Duodenibacillus intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.