Cluster: HRGMv2_0560_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0560
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0560_15 | HRGMv2_0560_15_2 | 1166 | 14281 | - | 1.B.12.1.6 |
| pfam | HRGMv2_0560_15 | HRGMv2_0560_15_3 | 14262 | 23654 | - | ESPR |
| CAZyme | HRGMv2_0560_15 | HRGMv2_0560_15_4 | 24112 | 25398 | + | GT4 |
| pfam | HRGMv2_0560_15 | HRGMv2_0560_15_5 | 25504 | 25794 | + | TniB | AAA_14 |
| TC | HRGMv2_0560_15 | HRGMv2_0560_15_6 | 25874 | 26818 | - | 5.A.3.5.2 |
| TC | HRGMv2_0560_15 | HRGMv2_0560_15_7 | 26819 | 27490 | - | 5.A.3.5.2 |
Gene ID: HRGMv2_0560_15_2
Type: TC
Location: 1166 - 14281 (-)
Type: TC
Location: 1166 - 14281 (-)
Gene ID: HRGMv2_0560_15_3
Type: pfam
Location: 14262 - 23654 (-)
Type: pfam
Location: 14262 - 23654 (-)
Gene ID: HRGMv2_0560_15_4
Type: CAZyme
Location: 24112 - 25398 (+)
Type: CAZyme
Location: 24112 - 25398 (+)
Gene ID: HRGMv2_0560_15_5
Type: pfam
Location: 25504 - 25794 (+)
Type: pfam
Location: 25504 - 25794 (+)
Gene ID: HRGMv2_0560_15_6
Type: TC
Location: 25874 - 26818 (-)
Type: TC
Location: 25874 - 26818 (-)
Gene ID: HRGMv2_0560_15_7
Type: TC
Location: 26819 - 27490 (-)
Type: TC
Location: 26819 - 27490 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Duodenibacillus
Species
Duodenibacillus intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.