Cluster: HRGMv2_0558_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0558
- CGC Family ID: CGCFAM_02766
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_181 | 217170 | 217442 | + | 3.A.23.2.1 |
| NULL(UNKNOWN) | HRGMv2_0558_1 | HRGMv2_0558_1_182 | 217562 | 218269 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_183 | 218900 | 219214 | + | 2.A.7.1.10 |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_184 | 219338 | 220315 | - | 8.A.5.1.4 |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_185 | 220544 | 221527 | - | 8.A.5.1.4 |
| CAZyme | HRGMv2_0558_1 | HRGMv2_0558_1_186 | 221604 | 223391 | - | GH15 |
| pfam | HRGMv2_0558_1 | HRGMv2_0558_1_187 | 223388 | 224206 | - | Trehalose_PPase |
| pfam | HRGMv2_0558_1 | HRGMv2_0558_1_188 | 224480 | 225076 | + | SNase |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_189 | 225156 | 226337 | - | 2.A.1.2.14 |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_190 | 226495 | 227682 | - | 2.A.1.2.14 |
| NULL(UNKNOWN) | HRGMv2_0558_1 | HRGMv2_0558_1_191 | 227911 | 228210 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0558_1 | HRGMv2_0558_1_192 | 228248 | 228628 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0558_1 | HRGMv2_0558_1_193 | 228828 | 229940 | - | 1.A.35.3.2 |
Gene ID: HRGMv2_0558_1_181
Type: TC
Location: 217170 - 217442 (+)
Type: TC
Location: 217170 - 217442 (+)
Gene ID: HRGMv2_0558_1_182
Type:
Location: 217562 - 218269 (-)
Type:
Location: 217562 - 218269 (-)
Gene ID: HRGMv2_0558_1_183
Type: TC
Location: 218900 - 219214 (+)
Type: TC
Location: 218900 - 219214 (+)
Gene ID: HRGMv2_0558_1_184
Type: TC
Location: 219338 - 220315 (-)
Type: TC
Location: 219338 - 220315 (-)
Gene ID: HRGMv2_0558_1_185
Type: TC
Location: 220544 - 221527 (-)
Type: TC
Location: 220544 - 221527 (-)
Gene ID: HRGMv2_0558_1_186
Type: CAZyme
Location: 221604 - 223391 (-)
Type: CAZyme
Location: 221604 - 223391 (-)
Gene ID: HRGMv2_0558_1_187
Type: pfam
Location: 223388 - 224206 (-)
Type: pfam
Location: 223388 - 224206 (-)
Gene ID: HRGMv2_0558_1_188
Type: pfam
Location: 224480 - 225076 (+)
Type: pfam
Location: 224480 - 225076 (+)
Gene ID: HRGMv2_0558_1_189
Type: TC
Location: 225156 - 226337 (-)
Type: TC
Location: 225156 - 226337 (-)
Gene ID: HRGMv2_0558_1_190
Type: TC
Location: 226495 - 227682 (-)
Type: TC
Location: 226495 - 227682 (-)
Gene ID: HRGMv2_0558_1_191
Type:
Location: 227911 - 228210 (-)
Type:
Location: 227911 - 228210 (-)
Gene ID: HRGMv2_0558_1_192
Type:
Location: 228248 - 228628 (-)
Type:
Location: 228248 - 228628 (-)
Gene ID: HRGMv2_0558_1_193
Type: TC
Location: 228828 - 229940 (-)
Type: TC
Location: 228828 - 229940 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter sp905202055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.