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Cluster: HRGMv2_0558_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0558_13 HRGMv2_0558_13_44 36152 38503 + 3.A.3.6.12
pfam HRGMv2_0558_13 HRGMv2_0558_13_45 38619 40106 + RmuC
STP HRGMv2_0558_13 HRGMv2_0558_13_46 40342 45006 + EAL | GAF | GAF | GGDEF | PAS
TC HRGMv2_0558_13 HRGMv2_0558_13_47 45250 49914 + 9.B.34.1.2
CAZyme HRGMv2_0558_13 HRGMv2_0558_13_48 49943 51358 - AA4
pfam HRGMv2_0558_13 HRGMv2_0558_13_49 51525 52844 + Virul_fac_BrkB
TC HRGMv2_0558_13 HRGMv2_0558_13_50 52937 54628 + 2.A.1.30.1
Gene ID: HRGMv2_0558_13_44
Type: TC
Location: 36152 - 38503 (+)
Gene ID: HRGMv2_0558_13_45
Type: pfam
Location: 38619 - 40106 (+)
Gene ID: HRGMv2_0558_13_46
Type: STP
Location: 40342 - 45006 (+)
Gene ID: HRGMv2_0558_13_47
Type: TC
Location: 45250 - 49914 (+)
Gene ID: HRGMv2_0558_13_48
Type: CAZyme
Location: 49943 - 51358 (-)
Gene ID: HRGMv2_0558_13_49
Type: pfam
Location: 51525 - 52844 (+)
Gene ID: HRGMv2_0558_13_50
Type: TC
Location: 52937 - 54628 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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