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Cluster: HRGMv2_0553_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0553_4 HRGMv2_0553_4_6 7485 8870 - 2.A.6.2.9
TC HRGMv2_0553_4 HRGMv2_0553_4_7 8890 12072 - 2.A.6.2.22
TC HRGMv2_0553_4 HRGMv2_0553_4_8 12202 13383 - 2.A.6.2.47
TC HRGMv2_0553_4 HRGMv2_0553_4_9 13856 14716 - 3.A.1.13.2
TC HRGMv2_0553_4 HRGMv2_0553_4_10 14754 15755 - 3.A.1.13.2
pfam HRGMv2_0553_4 HRGMv2_0553_4_11 15752 16732 - SpoU_methylase
pfam HRGMv2_0553_4 HRGMv2_0553_4_12 16846 18012 - Epimerase_2 | Glyco_trans_4_4
CAZyme HRGMv2_0553_4 HRGMv2_0553_4_13 18169 18924 - GT26
pfam HRGMv2_0553_4 HRGMv2_0553_4_14 18928 20133 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
NULL(UNKNOWN) HRGMv2_0553_4 HRGMv2_0553_4_15 20676 23738 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0553_4 HRGMv2_0553_4_16 23923 25386 + GT2
Gene ID: HRGMv2_0553_4_6
Type: TC
Location: 7485 - 8870 (-)
Gene ID: HRGMv2_0553_4_7
Type: TC
Location: 8890 - 12072 (-)
Gene ID: HRGMv2_0553_4_8
Type: TC
Location: 12202 - 13383 (-)
Gene ID: HRGMv2_0553_4_9
Type: TC
Location: 13856 - 14716 (-)
Gene ID: HRGMv2_0553_4_10
Type: TC
Location: 14754 - 15755 (-)
Gene ID: HRGMv2_0553_4_11
Type: pfam
Location: 15752 - 16732 (-)
Gene ID: HRGMv2_0553_4_12
Type: pfam
Location: 16846 - 18012 (-)
Gene ID: HRGMv2_0553_4_13
Type: CAZyme
Location: 18169 - 18924 (-)
Gene ID: HRGMv2_0553_4_14
Type: pfam
Location: 18928 - 20133 (-)
Gene ID: HRGMv2_0553_4_15
Type:
Location: 20676 - 23738 (+)
Gene ID: HRGMv2_0553_4_16
Type: CAZyme
Location: 23923 - 25386 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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