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Cluster: HRGMv2_0553_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0553_12 HRGMv2_0553_12_39 48541 49707 - GT4
pfam HRGMv2_0553_12 HRGMv2_0553_12_40 49803 51164 + CHU_C
CAZyme HRGMv2_0553_12 HRGMv2_0553_12_41 51409 52377 + GH23
TC HRGMv2_0553_12 HRGMv2_0553_12_42 52374 55298 + 3.A.1.3.25
pfam HRGMv2_0553_12 HRGMv2_0553_12_43 55286 56272 - ApbE
peptidase HRGMv2_0553_12 HRGMv2_0553_12_44 56459 57010 + C56.UNW
TC HRGMv2_0553_12 HRGMv2_0553_12_45 57154 58824 - 3.A.1.120.6
Gene ID: HRGMv2_0553_12_39
Type: CAZyme
Location: 48541 - 49707 (-)
Gene ID: HRGMv2_0553_12_40
Type: pfam
Location: 49803 - 51164 (+)
Gene ID: HRGMv2_0553_12_41
Type: CAZyme
Location: 51409 - 52377 (+)
Gene ID: HRGMv2_0553_12_42
Type: TC
Location: 52374 - 55298 (+)
Gene ID: HRGMv2_0553_12_43
Type: pfam
Location: 55286 - 56272 (-)
Gene ID: HRGMv2_0553_12_44
Type: peptidase
Location: 56459 - 57010 (+)
Gene ID: HRGMv2_0553_12_45
Type: TC
Location: 57154 - 58824 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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