Cluster: HRGMv2_0548_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0548
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0548_3 | HRGMv2_0548_3_147 | 186155 | 186976 | - | 2.A.5.5.5 |
| pfam | HRGMv2_0548_3 | HRGMv2_0548_3_148 | 187006 | 187920 | - | CN_hydrolase |
| pfam | HRGMv2_0548_3 | HRGMv2_0548_3_149 | 187926 | 188987 | - | PAD_porph |
| CAZyme | HRGMv2_0548_3 | HRGMv2_0548_3_150 | 189063 | 190091 | - | GT2 |
| TC | HRGMv2_0548_3 | HRGMv2_0548_3_151 | 190266 | 193046 | + | 1.C.105.2.12 |
| TC | HRGMv2_0548_3 | HRGMv2_0548_3_152 | 193346 | 194740 | - | 9.B.126.2.2 |
| TC | HRGMv2_0548_3 | HRGMv2_0548_3_153 | 194902 | 197166 | + | 1.B.14.10.1 |
Gene ID: HRGMv2_0548_3_147
Type: TC
Location: 186155 - 186976 (-)
Type: TC
Location: 186155 - 186976 (-)
Gene ID: HRGMv2_0548_3_148
Type: pfam
Location: 187006 - 187920 (-)
Type: pfam
Location: 187006 - 187920 (-)
Gene ID: HRGMv2_0548_3_149
Type: pfam
Location: 187926 - 188987 (-)
Type: pfam
Location: 187926 - 188987 (-)
Gene ID: HRGMv2_0548_3_150
Type: CAZyme
Location: 189063 - 190091 (-)
Type: CAZyme
Location: 189063 - 190091 (-)
Gene ID: HRGMv2_0548_3_151
Type: TC
Location: 190266 - 193046 (+)
Type: TC
Location: 190266 - 193046 (+)
Gene ID: HRGMv2_0548_3_152
Type: TC
Location: 193346 - 194740 (-)
Type: TC
Location: 193346 - 194740 (-)
Gene ID: HRGMv2_0548_3_153
Type: TC
Location: 194902 - 197166 (+)
Type: TC
Location: 194902 - 197166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas endodontalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.