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Cluster: HRGMv2_0548_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0548_1 HRGMv2_0548_1_419 491853 492926 - GT2
pfam HRGMv2_0548_1 HRGMv2_0548_1_420 492950 494245 - tRNA-synt_1b | SYY_C-terminal
pfam HRGMv2_0548_1 HRGMv2_0548_1_421 494289 495110 - LCM
TC HRGMv2_0548_1 HRGMv2_0548_1_422 495206 496933 - 3.A.1.106.11
TC HRGMv2_0548_1 HRGMv2_0548_1_423 496956 498707 - 3.A.1.21.1
pfam HRGMv2_0548_1 HRGMv2_0548_1_424 499060 500964 - Flg_new_2
NULL(UNKNOWN) HRGMv2_0548_1 HRGMv2_0548_1_425 501724 502116 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0548_1 HRGMv2_0548_1_426 502048 503337 - 9.A.40.2.4
Gene ID: HRGMv2_0548_1_419
Type: CAZyme
Location: 491853 - 492926 (-)
Gene ID: HRGMv2_0548_1_420
Type: pfam
Location: 492950 - 494245 (-)
Gene ID: HRGMv2_0548_1_421
Type: pfam
Location: 494289 - 495110 (-)
Gene ID: HRGMv2_0548_1_422
Type: TC
Location: 495206 - 496933 (-)
Gene ID: HRGMv2_0548_1_423
Type: TC
Location: 496956 - 498707 (-)
Gene ID: HRGMv2_0548_1_424
Type: pfam
Location: 499060 - 500964 (-)
Gene ID: HRGMv2_0548_1_425
Type:
Location: 501724 - 502116 (+)
Gene ID: HRGMv2_0548_1_426
Type: TC
Location: 502048 - 503337 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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