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Cluster: HRGMv2_0547_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0547_55 HRGMv2_0547_55_12 11504 12220 + 1.B.44.1.1
pfam HRGMv2_0547_55 HRGMv2_0547_55_13 12217 13218 + PorP_SprF
TC HRGMv2_0547_55 HRGMv2_0547_55_14 13296 14747 + 9.A.25.1.1
pfam HRGMv2_0547_55 HRGMv2_0547_55_15 14784 15743 + GldL_N
TC HRGMv2_0547_55 HRGMv2_0547_55_16 15795 17360 + 9.A.25.1.1
pfam HRGMv2_0547_55 HRGMv2_0547_55_17 17402 18550 + GldN
pfam HRGMv2_0547_55 HRGMv2_0547_55_18 18653 19204 - Ferritin | Rubrerythrin | RUBY_RBDX
TC HRGMv2_0547_55 HRGMv2_0547_55_19 19419 20117 + 1.A.8.8.14
pfam HRGMv2_0547_55 HRGMv2_0547_55_20 20212 21534 - AAA_14 | DUF4143
pfam HRGMv2_0547_55 HRGMv2_0547_55_21 21745 22593 - DUF4595
CAZyme HRGMv2_0547_55 HRGMv2_0547_55_22 22836 27974 - GH2
TC HRGMv2_0547_55 HRGMv2_0547_55_23 28158 29330 + 2.A.1.2.14
STP HRGMv2_0547_55 HRGMv2_0547_55_24 29459 30646 - Aminotran_1_2
TC HRGMv2_0547_55 HRGMv2_0547_55_25 31099 34458 - 3.A.5.1.1
Gene ID: HRGMv2_0547_55_12
Type: TC
Location: 11504 - 12220 (+)
Gene ID: HRGMv2_0547_55_13
Type: pfam
Location: 12217 - 13218 (+)
Gene ID: HRGMv2_0547_55_14
Type: TC
Location: 13296 - 14747 (+)
Gene ID: HRGMv2_0547_55_15
Type: pfam
Location: 14784 - 15743 (+)
Gene ID: HRGMv2_0547_55_16
Type: TC
Location: 15795 - 17360 (+)
Gene ID: HRGMv2_0547_55_17
Type: pfam
Location: 17402 - 18550 (+)
Gene ID: HRGMv2_0547_55_18
Type: pfam
Location: 18653 - 19204 (-)
Gene ID: HRGMv2_0547_55_19
Type: TC
Location: 19419 - 20117 (+)
Gene ID: HRGMv2_0547_55_20
Type: pfam
Location: 20212 - 21534 (-)
Gene ID: HRGMv2_0547_55_21
Type: pfam
Location: 21745 - 22593 (-)
Gene ID: HRGMv2_0547_55_22
Type: CAZyme
Location: 22836 - 27974 (-)
Gene ID: HRGMv2_0547_55_23
Type: TC
Location: 28158 - 29330 (+)
Gene ID: HRGMv2_0547_55_24
Type: STP
Location: 29459 - 30646 (-)
Gene ID: HRGMv2_0547_55_25
Type: TC
Location: 31099 - 34458 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0547_55_18 vegan > vegetarian 1.04136 0.00848

🧭 Explore Read Mapping of CGC

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