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Cluster: HRGMv2_0534_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0534_4 HRGMv2_0534_4_7 4886 6049 + 2.A.1.2.97
TC HRGMv2_0534_4 HRGMv2_0534_4_8 6057 6335 - 2.A.123.2.2
peptidase HRGMv2_0534_4 HRGMv2_0534_4_9 6604 9855 - S41.UPB
pfam HRGMv2_0534_4 HRGMv2_0534_4_10 9870 11522 - PMT_2
CAZyme HRGMv2_0534_4 HRGMv2_0534_4_11 11497 12465 - GT2
pfam HRGMv2_0534_4 HRGMv2_0534_4_12 12698 13798 + MMR_HSR1 | FeoB_N | YchF-GTPase_C
NULL(UNKNOWN) HRGMv2_0534_4 HRGMv2_0534_4_13 14069 16078 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0534_4 HRGMv2_0534_4_14 16075 17235 - GT4
pfam HRGMv2_0534_4 HRGMv2_0534_4_15 17238 18299 - Radical_SAM | SPASM
CAZyme HRGMv2_0534_4 HRGMv2_0534_4_16 18423 19649 - GT4
CAZyme HRGMv2_0534_4 HRGMv2_0534_4_17 19697 20830 - GT4
TC HRGMv2_0534_4 HRGMv2_0534_4_18 20848 22857 - 8.A.3.3.2
Gene ID: HRGMv2_0534_4_7
Type: TC
Location: 4886 - 6049 (+)
Gene ID: HRGMv2_0534_4_8
Type: TC
Location: 6057 - 6335 (-)
Gene ID: HRGMv2_0534_4_9
Type: peptidase
Location: 6604 - 9855 (-)
Gene ID: HRGMv2_0534_4_10
Type: pfam
Location: 9870 - 11522 (-)
Gene ID: HRGMv2_0534_4_11
Type: CAZyme
Location: 11497 - 12465 (-)
Gene ID: HRGMv2_0534_4_12
Type: pfam
Location: 12698 - 13798 (+)
Gene ID: HRGMv2_0534_4_13
Type:
Location: 14069 - 16078 (-)
Gene ID: HRGMv2_0534_4_14
Type: CAZyme
Location: 16075 - 17235 (-)
Gene ID: HRGMv2_0534_4_15
Type: pfam
Location: 17238 - 18299 (-)
Gene ID: HRGMv2_0534_4_16
Type: CAZyme
Location: 18423 - 19649 (-)
Gene ID: HRGMv2_0534_4_17
Type: CAZyme
Location: 19697 - 20830 (-)
Gene ID: HRGMv2_0534_4_18
Type: TC
Location: 20848 - 22857 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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