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Cluster: HRGMv2_0531_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0531_13 HRGMv2_0531_13_1 2 763 - 1.B.14.6.1
TF HRGMv2_0531_13 HRGMv2_0531_13_2 1058 2083 + LacI
TC HRGMv2_0531_13 HRGMv2_0531_13_3 2111 3463 + 2.A.2.6.2
CAZyme HRGMv2_0531_13 HRGMv2_0531_13_4 3510 6206 + GH77
CAZyme HRGMv2_0531_13 HRGMv2_0531_13_5 6282 8420 + GH97
CAZyme HRGMv2_0531_13 HRGMv2_0531_13_6 8431 10416 + GH13_14
CAZyme HRGMv2_0531_13 HRGMv2_0531_13_7 10430 12343 + GH13_46
TC HRGMv2_0531_13 HRGMv2_0531_13_8 12508 13083 - 2.A.51.1.6
TC HRGMv2_0531_13 HRGMv2_0531_13_9 13080 13643 - 2.A.51.1.6
Gene ID: HRGMv2_0531_13_1
Type: TC
Location: 2 - 763 (-)
Gene ID: HRGMv2_0531_13_2
Type: TF
Location: 1058 - 2083 (+)
Gene ID: HRGMv2_0531_13_3
Type: TC
Location: 2111 - 3463 (+)
Gene ID: HRGMv2_0531_13_4
Type: CAZyme
Location: 3510 - 6206 (+)
Gene ID: HRGMv2_0531_13_5
Type: CAZyme
Location: 6282 - 8420 (+)
Gene ID: HRGMv2_0531_13_6
Type: CAZyme
Location: 8431 - 10416 (+)
Gene ID: HRGMv2_0531_13_7
Type: CAZyme
Location: 10430 - 12343 (+)
Gene ID: HRGMv2_0531_13_8
Type: TC
Location: 12508 - 13083 (-)
Gene ID: HRGMv2_0531_13_9
Type: TC
Location: 13080 - 13643 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0531_13_1 vegetarian > omnivore 1.81154 0.00566
HRGMv2_0531_13_1 vegetarian > vegan 2.01759 0.00229

🧭 Explore Read Mapping of CGC

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