Cluster: HRGMv2_0531_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0531
- CGC Family ID: CGCFAM_01952
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_316 | 389157 | 390071 | + | GT2 |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_317 | 390085 | 391086 | + | GT2 |
| TC | HRGMv2_0531_2 | HRGMv2_0531_2_318 | 391102 | 392166 | + | 9.B.183.1.7 |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_319 | 392240 | 393136 | + | GT11 |
| NULL(UNKNOWN) | HRGMv2_0531_2 | HRGMv2_0531_2_320 | 393147 | 393623 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0531_2 | HRGMv2_0531_2_321 | 393628 | 394107 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_322 | 394120 | 395199 | + | GT4 |
| pfam | HRGMv2_0531_2 | HRGMv2_0531_2_323 | 395208 | 396122 | + | ATPgrasp_TupA |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_324 | 396230 | 397285 | + | GT4 |
| peptidase | HRGMv2_0531_2 | HRGMv2_0531_2_325 | 397311 | 399185 | + | C44.001 |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_326 | 399202 | 400038 | + | GT2 |
| pfam | HRGMv2_0531_2 | HRGMv2_0531_2_327 | 400035 | 401153 | + | NTP_transf_5 |
| CAZyme | HRGMv2_0531_2 | HRGMv2_0531_2_328 | 401196 | 402002 | + | GH25 |
Gene ID: HRGMv2_0531_2_316
Type: CAZyme
Location: 389157 - 390071 (+)
Type: CAZyme
Location: 389157 - 390071 (+)
Gene ID: HRGMv2_0531_2_317
Type: CAZyme
Location: 390085 - 391086 (+)
Type: CAZyme
Location: 390085 - 391086 (+)
Gene ID: HRGMv2_0531_2_318
Type: TC
Location: 391102 - 392166 (+)
Type: TC
Location: 391102 - 392166 (+)
Gene ID: HRGMv2_0531_2_319
Type: CAZyme
Location: 392240 - 393136 (+)
Type: CAZyme
Location: 392240 - 393136 (+)
Gene ID: HRGMv2_0531_2_320
Type:
Location: 393147 - 393623 (+)
Type:
Location: 393147 - 393623 (+)
Gene ID: HRGMv2_0531_2_321
Type:
Location: 393628 - 394107 (+)
Type:
Location: 393628 - 394107 (+)
Gene ID: HRGMv2_0531_2_322
Type: CAZyme
Location: 394120 - 395199 (+)
Type: CAZyme
Location: 394120 - 395199 (+)
Gene ID: HRGMv2_0531_2_323
Type: pfam
Location: 395208 - 396122 (+)
Type: pfam
Location: 395208 - 396122 (+)
Gene ID: HRGMv2_0531_2_324
Type: CAZyme
Location: 396230 - 397285 (+)
Type: CAZyme
Location: 396230 - 397285 (+)
Gene ID: HRGMv2_0531_2_325
Type: peptidase
Location: 397311 - 399185 (+)
Type: peptidase
Location: 397311 - 399185 (+)
Gene ID: HRGMv2_0531_2_326
Type: CAZyme
Location: 399202 - 400038 (+)
Type: CAZyme
Location: 399202 - 400038 (+)
Gene ID: HRGMv2_0531_2_327
Type: pfam
Location: 400035 - 401153 (+)
Type: pfam
Location: 400035 - 401153 (+)
Gene ID: HRGMv2_0531_2_328
Type: CAZyme
Location: 401196 - 402002 (+)
Type: CAZyme
Location: 401196 - 402002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900771975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.