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Cluster: HRGMv2_0505_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0505_66 HRGMv2_0505_66_2 471 1880 + GH28
STP HRGMv2_0505_66 HRGMv2_0505_66_3 1893 3419 + Fer4 | Fer4
STP HRGMv2_0505_66 HRGMv2_0505_66_4 3433 4842 + Fer4
CAZyme HRGMv2_0505_66 HRGMv2_0505_66_5 4998 6242 + PL1
pfam HRGMv2_0505_66 HRGMv2_0505_66_6 6229 6945 - TrmO_N | TrmO_C
TC HRGMv2_0505_66 HRGMv2_0505_66_7 7006 7671 + 9.B.20.1.4
TC HRGMv2_0505_66 HRGMv2_0505_66_8 7748 8686 + 2.A.115.1.1
TC HRGMv2_0505_66 HRGMv2_0505_66_9 8776 9915 - 3.A.1.13.2
NULL(UNKNOWN) HRGMv2_0505_66 HRGMv2_0505_66_10 9915 11033 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0505_66 HRGMv2_0505_66_11 11047 13026 - TonB_dep_Rec_b-barrel | Plug | OMP_b-brl_3
TC HRGMv2_0505_66 HRGMv2_0505_66_12 13465 14934 + 2.A.47.1.12
Gene ID: HRGMv2_0505_66_2
Type: CAZyme
Location: 471 - 1880 (+)
Gene ID: HRGMv2_0505_66_3
Type: STP
Location: 1893 - 3419 (+)
Gene ID: HRGMv2_0505_66_4
Type: STP
Location: 3433 - 4842 (+)
Gene ID: HRGMv2_0505_66_5
Type: CAZyme
Location: 4998 - 6242 (+)
Gene ID: HRGMv2_0505_66_6
Type: pfam
Location: 6229 - 6945 (-)
Gene ID: HRGMv2_0505_66_7
Type: TC
Location: 7006 - 7671 (+)
Gene ID: HRGMv2_0505_66_8
Type: TC
Location: 7748 - 8686 (+)
Gene ID: HRGMv2_0505_66_9
Type: TC
Location: 8776 - 9915 (-)
Gene ID: HRGMv2_0505_66_10
Type:
Location: 9915 - 11033 (-)
Gene ID: HRGMv2_0505_66_11
Type: pfam
Location: 11047 - 13026 (-)
Gene ID: HRGMv2_0505_66_12
Type: TC
Location: 13465 - 14934 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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