Cluster: HRGMv2_0505_CGC48
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0505
- CGC Family ID: CGCFAM_09700
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0505_27 | HRGMv2_0505_27_14 | 11365 | 12660 | - | 2.A.40.7.6 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_15 | 12739 | 15084 | - | GH35 |
| pfam | HRGMv2_0505_27 | HRGMv2_0505_27_16 | 15128 | 16123 | - | UPF0227 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_17 | 16141 | 18711 | - | GH2 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_18 | 18827 | 21631 | + | GH2 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_19 | 21730 | 22854 | + | GH43_24 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_20 | 22864 | 24903 | + | GH127 |
| TF | HRGMv2_0505_27 | HRGMv2_0505_27_21 | 24964 | 28521 | - | HTH_AraC |
| TC | HRGMv2_0505_27 | HRGMv2_0505_27_22 | 29230 | 32454 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0505_27 | HRGMv2_0505_27_23 | 32467 | 34479 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_24 | 34509 | 35774 | + | GH154 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_25 | 35805 | 36938 | + | GH105 |
| NULL(UNKNOWN) | HRGMv2_0505_27 | HRGMv2_0505_27_26 | 37057 | 37221 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_27 | 37663 | 40035 | - | GH2 |
| CAZyme | HRGMv2_0505_27 | HRGMv2_0505_27_28 | 40101 | 42425 | - | GH88 | PL38 |
Gene ID: HRGMv2_0505_27_14
Type: TC
Location: 11365 - 12660 (-)
Type: TC
Location: 11365 - 12660 (-)
Gene ID: HRGMv2_0505_27_15
Type: CAZyme
Location: 12739 - 15084 (-)
Type: CAZyme
Location: 12739 - 15084 (-)
Gene ID: HRGMv2_0505_27_16
Type: pfam
Location: 15128 - 16123 (-)
Type: pfam
Location: 15128 - 16123 (-)
Gene ID: HRGMv2_0505_27_17
Type: CAZyme
Location: 16141 - 18711 (-)
Type: CAZyme
Location: 16141 - 18711 (-)
Gene ID: HRGMv2_0505_27_18
Type: CAZyme
Location: 18827 - 21631 (+)
Type: CAZyme
Location: 18827 - 21631 (+)
Gene ID: HRGMv2_0505_27_19
Type: CAZyme
Location: 21730 - 22854 (+)
Type: CAZyme
Location: 21730 - 22854 (+)
Gene ID: HRGMv2_0505_27_20
Type: CAZyme
Location: 22864 - 24903 (+)
Type: CAZyme
Location: 22864 - 24903 (+)
Gene ID: HRGMv2_0505_27_21
Type: TF
Location: 24964 - 28521 (-)
Type: TF
Location: 24964 - 28521 (-)
Gene ID: HRGMv2_0505_27_22
Type: TC
Location: 29230 - 32454 (+)
Type: TC
Location: 29230 - 32454 (+)
Gene ID: HRGMv2_0505_27_23
Type: pfam
Location: 32467 - 34479 (+)
Type: pfam
Location: 32467 - 34479 (+)
Gene ID: HRGMv2_0505_27_24
Type: CAZyme
Location: 34509 - 35774 (+)
Type: CAZyme
Location: 34509 - 35774 (+)
Gene ID: HRGMv2_0505_27_25
Type: CAZyme
Location: 35805 - 36938 (+)
Type: CAZyme
Location: 35805 - 36938 (+)
Gene ID: HRGMv2_0505_27_26
Type:
Location: 37057 - 37221 (-)
Type:
Location: 37057 - 37221 (-)
Gene ID: HRGMv2_0505_27_27
Type: CAZyme
Location: 37663 - 40035 (-)
Type: CAZyme
Location: 37663 - 40035 (-)
Gene ID: HRGMv2_0505_27_28
Type: CAZyme
Location: 40101 - 42425 (-)
Type: CAZyme
Location: 40101 - 42425 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900316015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.