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Cluster: HRGMv2_0505_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0505_18 HRGMv2_0505_18_1 124 2775 - GH2
pfam HRGMv2_0505_18 HRGMv2_0505_18_2 2843 4399 - SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0505_18 HRGMv2_0505_18_3 4419 5387 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0505_18 HRGMv2_0505_18_4 5390 7534 - 1.B.14.6.1
TF HRGMv2_0505_18 HRGMv2_0505_18_5 7664 11557 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0505_18 HRGMv2_0505_18_6 11554 13356 - GH123
pfam HRGMv2_0505_18 HRGMv2_0505_18_7 13745 15787 - SusD_RagB | SusD-like_3
TC HRGMv2_0505_18 HRGMv2_0505_18_8 15827 19030 - 1.B.14.6.1
TC HRGMv2_0505_18 HRGMv2_0505_18_9 19558 21945 + 1.B.14.14.1
TC HRGMv2_0505_18 HRGMv2_0505_18_10 21962 22579 + 4.B.1.1.4
Gene ID: HRGMv2_0505_18_1
Type: CAZyme
Location: 124 - 2775 (-)
Gene ID: HRGMv2_0505_18_2
Type: pfam
Location: 2843 - 4399 (-)
Gene ID: HRGMv2_0505_18_3
Type:
Location: 4419 - 5387 (-)
Gene ID: HRGMv2_0505_18_4
Type: TC
Location: 5390 - 7534 (-)
Gene ID: HRGMv2_0505_18_5
Type: TF
Location: 7664 - 11557 (-)
Gene ID: HRGMv2_0505_18_6
Type: CAZyme
Location: 11554 - 13356 (-)
Gene ID: HRGMv2_0505_18_7
Type: pfam
Location: 13745 - 15787 (-)
Gene ID: HRGMv2_0505_18_8
Type: TC
Location: 15827 - 19030 (-)
Gene ID: HRGMv2_0505_18_9
Type: TC
Location: 19558 - 21945 (+)
Gene ID: HRGMv2_0505_18_10
Type: TC
Location: 21962 - 22579 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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