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Cluster: HRGMv2_0505_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0505_13 HRGMv2_0505_13_12 6526 6813 + 1.B.14.6.1
TC HRGMv2_0505_13 HRGMv2_0505_13_13 6834 8444 + 8.A.46.1.1
pfam HRGMv2_0505_13 HRGMv2_0505_13_14 8527 9696 + SusE
pfam HRGMv2_0505_13 HRGMv2_0505_13_15 9753 10802 + LPAM_1
CAZyme HRGMv2_0505_13 HRGMv2_0505_13_16 11393 13459 + GH13_7
NULL(UNKNOWN) HRGMv2_0505_13 HRGMv2_0505_13_17 13463 13702 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0505_13 HRGMv2_0505_13_18 13843 17049 + 1.B.14.6.1
pfam HRGMv2_0505_13 HRGMv2_0505_13_19 17084 19117 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0505_13 HRGMv2_0505_13_20 19230 19709 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0505_13 HRGMv2_0505_13_21 19792 22257 - GH3
Gene ID: HRGMv2_0505_13_12
Type: TC
Location: 6526 - 6813 (+)
Gene ID: HRGMv2_0505_13_13
Type: TC
Location: 6834 - 8444 (+)
Gene ID: HRGMv2_0505_13_14
Type: pfam
Location: 8527 - 9696 (+)
Gene ID: HRGMv2_0505_13_15
Type: pfam
Location: 9753 - 10802 (+)
Gene ID: HRGMv2_0505_13_16
Type: CAZyme
Location: 11393 - 13459 (+)
Gene ID: HRGMv2_0505_13_17
Type:
Location: 13463 - 13702 (-)
Gene ID: HRGMv2_0505_13_18
Type: TC
Location: 13843 - 17049 (+)
Gene ID: HRGMv2_0505_13_19
Type: pfam
Location: 17084 - 19117 (+)
Gene ID: HRGMv2_0505_13_20
Type:
Location: 19230 - 19709 (+)
Gene ID: HRGMv2_0505_13_21
Type: CAZyme
Location: 19792 - 22257 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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