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Cluster: HRGMv2_0505_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0505_4 HRGMv2_0505_4_21 22506 24566 + 3.A.25.1.1
pfam HRGMv2_0505_4 HRGMv2_0505_4_22 24621 25487 + CTP_transf_1
CAZyme HRGMv2_0505_4 HRGMv2_0505_4_23 25460 26626 - GT19
pfam HRGMv2_0505_4 HRGMv2_0505_4_24 26623 27393 - SurE
TC HRGMv2_0505_4 HRGMv2_0505_4_25 27526 28290 + 8.A.3.2.3
TF HRGMv2_0505_4 HRGMv2_0505_4_26 28293 29186 + HTH_3
pfam HRGMv2_0505_4 HRGMv2_0505_4_27 29190 29933 + DUF5683
CAZyme HRGMv2_0505_4 HRGMv2_0505_4_28 29968 31335 + GH23
STP HRGMv2_0505_4 HRGMv2_0505_4_29 31351 33642 + ACT | HD
CAZyme HRGMv2_0505_4 HRGMv2_0505_4_30 33678 34655 + CE8
TF HRGMv2_0505_4 HRGMv2_0505_4_31 34684 35034 - MerR
pfam HRGMv2_0505_4 HRGMv2_0505_4_32 35142 37763 + tRNA-synt_2c | DHHA1 | tRNA_SAD
CAZyme HRGMv2_0505_4 HRGMv2_0505_4_33 37957 39945 - GH20
TC HRGMv2_0505_4 HRGMv2_0505_4_34 39964 41418 - 3.A.7.16.1
Gene ID: HRGMv2_0505_4_21
Type: TC
Location: 22506 - 24566 (+)
Gene ID: HRGMv2_0505_4_22
Type: pfam
Location: 24621 - 25487 (+)
Gene ID: HRGMv2_0505_4_23
Type: CAZyme
Location: 25460 - 26626 (-)
Gene ID: HRGMv2_0505_4_24
Type: pfam
Location: 26623 - 27393 (-)
Gene ID: HRGMv2_0505_4_25
Type: TC
Location: 27526 - 28290 (+)
Gene ID: HRGMv2_0505_4_26
Type: TF
Location: 28293 - 29186 (+)
Gene ID: HRGMv2_0505_4_27
Type: pfam
Location: 29190 - 29933 (+)
Gene ID: HRGMv2_0505_4_28
Type: CAZyme
Location: 29968 - 31335 (+)
Gene ID: HRGMv2_0505_4_29
Type: STP
Location: 31351 - 33642 (+)
Gene ID: HRGMv2_0505_4_30
Type: CAZyme
Location: 33678 - 34655 (+)
Gene ID: HRGMv2_0505_4_31
Type: TF
Location: 34684 - 35034 (-)
Gene ID: HRGMv2_0505_4_32
Type: pfam
Location: 35142 - 37763 (+)
Gene ID: HRGMv2_0505_4_33
Type: CAZyme
Location: 37957 - 39945 (-)
Gene ID: HRGMv2_0505_4_34
Type: TC
Location: 39964 - 41418 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0505_4_21 vegetarian > vegan 1.00593 0.01141

🧭 Explore Read Mapping of CGC

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