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Cluster: HRGMv2_0471_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0471_43 HRGMv2_0471_43_24 36096 39065 + 1.B.14.6.1
TC HRGMv2_0471_43 HRGMv2_0471_43_25 39102 40811 + 8.A.46.1.1
pfam HRGMv2_0471_43 HRGMv2_0471_43_26 40835 42538 + SusF_SusE
pfam HRGMv2_0471_43 HRGMv2_0471_43_27 42553 43926 + SusF_SusE
CAZyme HRGMv2_0471_43 HRGMv2_0471_43_28 43933 47292 + GH27
CAZyme HRGMv2_0471_43 HRGMv2_0471_43_29 47451 48818 + GH27
pfam HRGMv2_0471_43 HRGMv2_0471_43_30 48863 49246 + CBM_35
CAZyme HRGMv2_0471_43 HRGMv2_0471_43_31 49261 51237 + GH97
Gene ID: HRGMv2_0471_43_24
Type: TC
Location: 36096 - 39065 (+)
Gene ID: HRGMv2_0471_43_25
Type: TC
Location: 39102 - 40811 (+)
Gene ID: HRGMv2_0471_43_26
Type: pfam
Location: 40835 - 42538 (+)
Gene ID: HRGMv2_0471_43_27
Type: pfam
Location: 42553 - 43926 (+)
Gene ID: HRGMv2_0471_43_28
Type: CAZyme
Location: 43933 - 47292 (+)
Gene ID: HRGMv2_0471_43_29
Type: CAZyme
Location: 47451 - 48818 (+)
Gene ID: HRGMv2_0471_43_30
Type: pfam
Location: 48863 - 49246 (+)
Gene ID: HRGMv2_0471_43_31
Type: CAZyme
Location: 49261 - 51237 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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