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Cluster: HRGMv2_0471_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0471_20 HRGMv2_0471_20_27 28782 31190 - GH2
CAZyme HRGMv2_0471_20 HRGMv2_0471_20_28 31214 32287 - GH53
CAZyme HRGMv2_0471_20 HRGMv2_0471_20_29 32309 33358 - GH53
pfam HRGMv2_0471_20 HRGMv2_0471_20_30 33569 35284 - SusE | DUF5111 | DUF5114
TC HRGMv2_0471_20 HRGMv2_0471_20_31 35306 36874 - 8.A.46.1.1
TC HRGMv2_0471_20 HRGMv2_0471_20_32 36899 39865 - 1.B.14.6.1
TF HRGMv2_0471_20 HRGMv2_0471_20_33 40293 44207 - HTH_AraC
pfam HRGMv2_0471_20 HRGMv2_0471_20_34 44835 45350 - DUF1016_N
TC HRGMv2_0471_20 HRGMv2_0471_20_35 45524 47383 - 1.B.14.10.3
Gene ID: HRGMv2_0471_20_27
Type: CAZyme
Location: 28782 - 31190 (-)
Gene ID: HRGMv2_0471_20_28
Type: CAZyme
Location: 31214 - 32287 (-)
Gene ID: HRGMv2_0471_20_29
Type: CAZyme
Location: 32309 - 33358 (-)
Gene ID: HRGMv2_0471_20_30
Type: pfam
Location: 33569 - 35284 (-)
Gene ID: HRGMv2_0471_20_31
Type: TC
Location: 35306 - 36874 (-)
Gene ID: HRGMv2_0471_20_32
Type: TC
Location: 36899 - 39865 (-)
Gene ID: HRGMv2_0471_20_33
Type: TF
Location: 40293 - 44207 (-)
Gene ID: HRGMv2_0471_20_34
Type: pfam
Location: 44835 - 45350 (-)
Gene ID: HRGMv2_0471_20_35
Type: TC
Location: 45524 - 47383 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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