Cluster: HRGMv2_0438_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: HRGMv2_0438
- CGC Family ID: CGCFAM_00079
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_80 | 110477 | 112969 | - | GH3 |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_81 | 113055 | 115397 | - | GH3 |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_82 | 115421 | 116614 | - | CE1 |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_83 | 116647 | 117849 | - | CE1 |
| NULL(UNKNOWN) | HRGMv2_0438_3 | HRGMv2_0438_3_84 | 117857 | 119491 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_85 | 119571 | 120452 | - | CE1 |
| pfam | HRGMv2_0438_3 | HRGMv2_0438_3_86 | 120485 | 121351 | - | Lactamase_B |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_87 | 121371 | 122237 | - | CE1 |
| CAZyme | HRGMv2_0438_3 | HRGMv2_0438_3_88 | 122275 | 123555 | - | GH158 |
| TC | HRGMv2_0438_3 | HRGMv2_0438_3_89 | 123637 | 125316 | - | 8.A.46.1.3 |
| TC | HRGMv2_0438_3 | HRGMv2_0438_3_90 | 125336 | 128449 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0438_3_80
Type: CAZyme
Location: 110477 - 112969 (-)
Type: CAZyme
Location: 110477 - 112969 (-)
Gene ID: HRGMv2_0438_3_81
Type: CAZyme
Location: 113055 - 115397 (-)
Type: CAZyme
Location: 113055 - 115397 (-)
Gene ID: HRGMv2_0438_3_82
Type: CAZyme
Location: 115421 - 116614 (-)
Type: CAZyme
Location: 115421 - 116614 (-)
Gene ID: HRGMv2_0438_3_83
Type: CAZyme
Location: 116647 - 117849 (-)
Type: CAZyme
Location: 116647 - 117849 (-)
Gene ID: HRGMv2_0438_3_84
Type:
Location: 117857 - 119491 (-)
Type:
Location: 117857 - 119491 (-)
Gene ID: HRGMv2_0438_3_85
Type: CAZyme
Location: 119571 - 120452 (-)
Type: CAZyme
Location: 119571 - 120452 (-)
Gene ID: HRGMv2_0438_3_86
Type: pfam
Location: 120485 - 121351 (-)
Type: pfam
Location: 120485 - 121351 (-)
Gene ID: HRGMv2_0438_3_87
Type: CAZyme
Location: 121371 - 122237 (-)
Type: CAZyme
Location: 121371 - 122237 (-)
Gene ID: HRGMv2_0438_3_88
Type: CAZyme
Location: 122275 - 123555 (-)
Type: CAZyme
Location: 122275 - 123555 (-)
Gene ID: HRGMv2_0438_3_89
Type: TC
Location: 123637 - 125316 (-)
Type: TC
Location: 123637 - 125316 (-)
Gene ID: HRGMv2_0438_3_90
Type: TC
Location: 125336 - 128449 (-)
Type: TC
Location: 125336 - 128449 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.