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Cluster: HRGMv2_0438_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0438_3 HRGMv2_0438_3_5 5795 8818 + 1.B.14.6.1
pfam HRGMv2_0438_3 HRGMv2_0438_3_6 8837 10387 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0438_3 HRGMv2_0438_3_7 10453 11823 + GH144
CAZyme HRGMv2_0438_3 HRGMv2_0438_3_8 12010 14205 + GH3
TC HRGMv2_0438_3 HRGMv2_0438_3_9 14349 17384 + 1.B.14.6.1
TC HRGMv2_0438_3 HRGMv2_0438_3_10 17463 18983 + 8.A.46.1.3
CAZyme HRGMv2_0438_3 HRGMv2_0438_3_11 19102 21447 + GH3
CAZyme HRGMv2_0438_3 HRGMv2_0438_3_12 21489 22820 + GH144
Gene ID: HRGMv2_0438_3_5
Type: TC
Location: 5795 - 8818 (+)
Gene ID: HRGMv2_0438_3_6
Type: pfam
Location: 8837 - 10387 (+)
Gene ID: HRGMv2_0438_3_7
Type: CAZyme
Location: 10453 - 11823 (+)
Gene ID: HRGMv2_0438_3_8
Type: CAZyme
Location: 12010 - 14205 (+)
Gene ID: HRGMv2_0438_3_9
Type: TC
Location: 14349 - 17384 (+)
Gene ID: HRGMv2_0438_3_10
Type: TC
Location: 17463 - 18983 (+)
Gene ID: HRGMv2_0438_3_11
Type: CAZyme
Location: 19102 - 21447 (+)
Gene ID: HRGMv2_0438_3_12
Type: CAZyme
Location: 21489 - 22820 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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