dbCAN Logo

Cluster: HRGMv2_0438_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0438_36 HRGMv2_0438_36_1 1 3252 + 1.B.14.6.1
pfam HRGMv2_0438_36 HRGMv2_0438_36_2 3265 5127 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0438_36 HRGMv2_0438_36_3 5782 8229 - GH146
CAZyme HRGMv2_0438_36 HRGMv2_0438_36_4 8252 9364 - GH43
CAZyme HRGMv2_0438_36 HRGMv2_0438_36_5 10126 11292 + GH171
TC HRGMv2_0438_36 HRGMv2_0438_36_6 11379 12833 + 2.A.21.3.7
NULL(UNKNOWN) HRGMv2_0438_36 HRGMv2_0438_36_7 12849 15848 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0438_36 HRGMv2_0438_36_8 15869 17728 + Metallophos | PQQ | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
CAZyme HRGMv2_0438_36 HRGMv2_0438_36_9 17757 19217 + GT2
Gene ID: HRGMv2_0438_36_1
Type: TC
Location: 1 - 3252 (+)
Gene ID: HRGMv2_0438_36_2
Type: pfam
Location: 3265 - 5127 (+)
Gene ID: HRGMv2_0438_36_3
Type: CAZyme
Location: 5782 - 8229 (-)
Gene ID: HRGMv2_0438_36_4
Type: CAZyme
Location: 8252 - 9364 (-)
Gene ID: HRGMv2_0438_36_5
Type: CAZyme
Location: 10126 - 11292 (+)
Gene ID: HRGMv2_0438_36_6
Type: TC
Location: 11379 - 12833 (+)
Gene ID: HRGMv2_0438_36_7
Type:
Location: 12849 - 15848 (+)
Gene ID: HRGMv2_0438_36_8
Type: pfam
Location: 15869 - 17728 (+)
Gene ID: HRGMv2_0438_36_9
Type: CAZyme
Location: 17757 - 19217 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List