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Cluster: HRGMv2_0438_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0438_34 HRGMv2_0438_34_17 21361 23940 - GH13_10
pfam HRGMv2_0438_34 HRGMv2_0438_34_18 24637 26562 - SusE | SusE | SusF_SusE
pfam HRGMv2_0438_34 HRGMv2_0438_34_19 26620 27732 - SusE
TC HRGMv2_0438_34 HRGMv2_0438_34_20 27772 29412 - 8.A.46.1.1
TC HRGMv2_0438_34 HRGMv2_0438_34_21 29427 32420 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0438_34 HRGMv2_0438_34_22 32491 32829 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0438_34 HRGMv2_0438_34_23 32911 35385 - GH2
CAZyme HRGMv2_0438_34 HRGMv2_0438_34_24 35412 36563 - GH53
TF HRGMv2_0438_34 HRGMv2_0438_34_25 36920 37924 + LacI
TC HRGMv2_0438_34 HRGMv2_0438_34_26 37944 39317 + 2.A.2.6.2
CAZyme HRGMv2_0438_34 HRGMv2_0438_34_27 39538 41850 + GH65
Gene ID: HRGMv2_0438_34_17
Type: CAZyme
Location: 21361 - 23940 (-)
Gene ID: HRGMv2_0438_34_18
Type: pfam
Location: 24637 - 26562 (-)
Gene ID: HRGMv2_0438_34_19
Type: pfam
Location: 26620 - 27732 (-)
Gene ID: HRGMv2_0438_34_20
Type: TC
Location: 27772 - 29412 (-)
Gene ID: HRGMv2_0438_34_21
Type: TC
Location: 29427 - 32420 (-)
Gene ID: HRGMv2_0438_34_22
Type:
Location: 32491 - 32829 (-)
Gene ID: HRGMv2_0438_34_23
Type: CAZyme
Location: 32911 - 35385 (-)
Gene ID: HRGMv2_0438_34_24
Type: CAZyme
Location: 35412 - 36563 (-)
Gene ID: HRGMv2_0438_34_25
Type: TF
Location: 36920 - 37924 (+)
Gene ID: HRGMv2_0438_34_26
Type: TC
Location: 37944 - 39317 (+)
Gene ID: HRGMv2_0438_34_27
Type: CAZyme
Location: 39538 - 41850 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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