Cluster: HRGMv2_0438_CGC41
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0438
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0438_24 | HRGMv2_0438_24_3 | 1461 | 2861 | - | 2.A.6.2.20 |
| TC | HRGMv2_0438_24 | HRGMv2_0438_24_4 | 2905 | 6096 | - | 2.A.6.2.22 |
| TC | HRGMv2_0438_24 | HRGMv2_0438_24_5 | 6117 | 7214 | - | 2.A.6.2.47 |
| TF | HRGMv2_0438_24 | HRGMv2_0438_24_6 | 7415 | 8293 | + | HTH_AraC |
| CAZyme | HRGMv2_0438_24 | HRGMv2_0438_24_7 | 8342 | 10009 | + | GH20 |
| TC | HRGMv2_0438_24 | HRGMv2_0438_24_8 | 10010 | 11518 | - | 2.A.50.2.1 |
Gene ID: HRGMv2_0438_24_3
Type: TC
Location: 1461 - 2861 (-)
Type: TC
Location: 1461 - 2861 (-)
Gene ID: HRGMv2_0438_24_4
Type: TC
Location: 2905 - 6096 (-)
Type: TC
Location: 2905 - 6096 (-)
Gene ID: HRGMv2_0438_24_5
Type: TC
Location: 6117 - 7214 (-)
Type: TC
Location: 6117 - 7214 (-)
Gene ID: HRGMv2_0438_24_6
Type: TF
Location: 7415 - 8293 (+)
Type: TF
Location: 7415 - 8293 (+)
Gene ID: HRGMv2_0438_24_7
Type: CAZyme
Location: 8342 - 10009 (+)
Type: CAZyme
Location: 8342 - 10009 (+)
Gene ID: HRGMv2_0438_24_8
Type: TC
Location: 10010 - 11518 (-)
Type: TC
Location: 10010 - 11518 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.