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Cluster: HRGMv2_0438_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_21 21795 24809 + GH3
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_22 24830 27877 + GH3
pfam HRGMv2_0438_21 HRGMv2_0438_21_23 27985 28614 - OMP_b-brl
pfam HRGMv2_0438_21 HRGMv2_0438_21_24 28741 29379 - DUF4136
TC HRGMv2_0438_21 HRGMv2_0438_21_25 29599 30600 - 8.A.5.1.3
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_26 30619 33117 - GH94
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_27 33338 35782 + GH2
TF HRGMv2_0438_21 HRGMv2_0438_21_28 36143 37030 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_29 37103 38383 + CE7
NULL(UNKNOWN) HRGMv2_0438_21 HRGMv2_0438_21_30 38671 38898 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0438_21 HRGMv2_0438_21_31 38957 39916 + GH5_2
TC HRGMv2_0438_21 HRGMv2_0438_21_32 40143 43409 + 1.B.14.6.1
Gene ID: HRGMv2_0438_21_21
Type: CAZyme
Location: 21795 - 24809 (+)
Gene ID: HRGMv2_0438_21_22
Type: CAZyme
Location: 24830 - 27877 (+)
Gene ID: HRGMv2_0438_21_23
Type: pfam
Location: 27985 - 28614 (-)
Gene ID: HRGMv2_0438_21_24
Type: pfam
Location: 28741 - 29379 (-)
Gene ID: HRGMv2_0438_21_25
Type: TC
Location: 29599 - 30600 (-)
Gene ID: HRGMv2_0438_21_26
Type: CAZyme
Location: 30619 - 33117 (-)
Gene ID: HRGMv2_0438_21_27
Type: CAZyme
Location: 33338 - 35782 (+)
Gene ID: HRGMv2_0438_21_28
Type: TF
Location: 36143 - 37030 (+)
Gene ID: HRGMv2_0438_21_29
Type: CAZyme
Location: 37103 - 38383 (+)
Gene ID: HRGMv2_0438_21_30
Type:
Location: 38671 - 38898 (-)
Gene ID: HRGMv2_0438_21_31
Type: CAZyme
Location: 38957 - 39916 (+)
Gene ID: HRGMv2_0438_21_32
Type: TC
Location: 40143 - 43409 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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