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Cluster: HRGMv2_0438_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0438_17 HRGMv2_0438_17_23 30352 32937 - 1.B.14.6.14
pfam HRGMv2_0438_17 HRGMv2_0438_17_24 33237 34331 - Epimerase_2
TC HRGMv2_0438_17 HRGMv2_0438_17_25 34445 35071 + 1.A.62.2.1
peptidase HRGMv2_0438_17 HRGMv2_0438_17_26 35144 38047 - M16.UNW
STP HRGMv2_0438_17 HRGMv2_0438_17_27 38319 38825 + Sigma70_r2 | Sigma70_r4_2
TC HRGMv2_0438_17 HRGMv2_0438_17_28 38955 40742 + 3.B.1.1.6
STP HRGMv2_0438_17 HRGMv2_0438_17_29 40772 43462 - HATPase_c | HisKA | Response_reg
CAZyme HRGMv2_0438_17 HRGMv2_0438_17_30 43479 44669 - GT2
Gene ID: HRGMv2_0438_17_23
Type: TC
Location: 30352 - 32937 (-)
Gene ID: HRGMv2_0438_17_24
Type: pfam
Location: 33237 - 34331 (-)
Gene ID: HRGMv2_0438_17_25
Type: TC
Location: 34445 - 35071 (+)
Gene ID: HRGMv2_0438_17_26
Type: peptidase
Location: 35144 - 38047 (-)
Gene ID: HRGMv2_0438_17_27
Type: STP
Location: 38319 - 38825 (+)
Gene ID: HRGMv2_0438_17_28
Type: TC
Location: 38955 - 40742 (+)
Gene ID: HRGMv2_0438_17_29
Type: STP
Location: 40772 - 43462 (-)
Gene ID: HRGMv2_0438_17_30
Type: CAZyme
Location: 43479 - 44669 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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