Cluster: HRGMv2_0438_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: host glycan
- Genome ID: HRGMv2_0438
- CGC Family ID: CGCFAM_00109
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0438_12 | HRGMv2_0438_12_36 | 49221 | 51095 | - | 1.C.39.4.5 |
| TC | HRGMv2_0438_12 | HRGMv2_0438_12_37 | 51406 | 54567 | + | 1.B.14.6.1 |
| TC | HRGMv2_0438_12 | HRGMv2_0438_12_38 | 54587 | 56077 | + | 8.A.46.3.2 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_39 | 56284 | 58101 | + | GH2 |
| TF | HRGMv2_0438_12 | HRGMv2_0438_12_40 | 58220 | 62140 | + | HTH_AraC |
| TC | HRGMv2_0438_12 | HRGMv2_0438_12_41 | 62452 | 65463 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0438_12 | HRGMv2_0438_12_42 | 65486 | 67063 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_43 | 67148 | 69790 | + | GH43_31 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_44 | 70037 | 71020 | + | GH43_31 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_45 | 71040 | 72044 | + | GH43_3 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_46 | 72067 | 74097 | + | GH182 |
| sulfatase | HRGMv2_0438_12 | HRGMv2_0438_12_47 | 74139 | 75263 | + | S1_22 |
| CAZyme | HRGMv2_0438_12 | HRGMv2_0438_12_48 | 75821 | 77110 | + | GH177 |
Gene ID: HRGMv2_0438_12_36
Type: TC
Location: 49221 - 51095 (-)
Type: TC
Location: 49221 - 51095 (-)
Gene ID: HRGMv2_0438_12_37
Type: TC
Location: 51406 - 54567 (+)
Type: TC
Location: 51406 - 54567 (+)
Gene ID: HRGMv2_0438_12_38
Type: TC
Location: 54587 - 56077 (+)
Type: TC
Location: 54587 - 56077 (+)
Gene ID: HRGMv2_0438_12_39
Type: CAZyme
Location: 56284 - 58101 (+)
Type: CAZyme
Location: 56284 - 58101 (+)
Gene ID: HRGMv2_0438_12_40
Type: TF
Location: 58220 - 62140 (+)
Type: TF
Location: 58220 - 62140 (+)
Gene ID: HRGMv2_0438_12_41
Type: TC
Location: 62452 - 65463 (+)
Type: TC
Location: 62452 - 65463 (+)
Gene ID: HRGMv2_0438_12_42
Type: pfam
Location: 65486 - 67063 (+)
Type: pfam
Location: 65486 - 67063 (+)
Gene ID: HRGMv2_0438_12_43
Type: CAZyme
Location: 67148 - 69790 (+)
Type: CAZyme
Location: 67148 - 69790 (+)
Gene ID: HRGMv2_0438_12_44
Type: CAZyme
Location: 70037 - 71020 (+)
Type: CAZyme
Location: 70037 - 71020 (+)
Gene ID: HRGMv2_0438_12_45
Type: CAZyme
Location: 71040 - 72044 (+)
Type: CAZyme
Location: 71040 - 72044 (+)
Gene ID: HRGMv2_0438_12_46
Type: CAZyme
Location: 72067 - 74097 (+)
Type: CAZyme
Location: 72067 - 74097 (+)
Gene ID: HRGMv2_0438_12_47
Type: sulfatase
Location: 74139 - 75263 (+)
Type: sulfatase
Location: 74139 - 75263 (+)
Gene ID: HRGMv2_0438_12_48
Type: CAZyme
Location: 75821 - 77110 (+)
Type: CAZyme
Location: 75821 - 77110 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.