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Cluster: HRGMv2_0438_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_10 16020 17969 - GH97
NULL(UNKNOWN) HRGMv2_0438_12 HRGMv2_0438_12_11 18069 18356 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_12 18468 19685 + GH76
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_13 19722 21185 + GH125
TC HRGMv2_0438_12 HRGMv2_0438_12_14 21243 24419 + 1.B.14.6.1
pfam HRGMv2_0438_12 HRGMv2_0438_12_15 24435 26045 + SusD_RagB | SusD-like_3
pfam HRGMv2_0438_12 HRGMv2_0438_12_16 26079 27227 + SusE
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_17 27242 28375 + GH76
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_18 28485 30635 + GH92
CAZyme HRGMv2_0438_12 HRGMv2_0438_12_19 30651 33278 + CBM67 | GH78
Gene ID: HRGMv2_0438_12_10
Type: CAZyme
Location: 16020 - 17969 (-)
Gene ID: HRGMv2_0438_12_11
Type:
Location: 18069 - 18356 (+)
Gene ID: HRGMv2_0438_12_12
Type: CAZyme
Location: 18468 - 19685 (+)
Gene ID: HRGMv2_0438_12_13
Type: CAZyme
Location: 19722 - 21185 (+)
Gene ID: HRGMv2_0438_12_14
Type: TC
Location: 21243 - 24419 (+)
Gene ID: HRGMv2_0438_12_15
Type: pfam
Location: 24435 - 26045 (+)
Gene ID: HRGMv2_0438_12_16
Type: pfam
Location: 26079 - 27227 (+)
Gene ID: HRGMv2_0438_12_17
Type: CAZyme
Location: 27242 - 28375 (+)
Gene ID: HRGMv2_0438_12_18
Type: CAZyme
Location: 28485 - 30635 (+)
Gene ID: HRGMv2_0438_12_19
Type: CAZyme
Location: 30651 - 33278 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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