Cluster: HRGMv2_0438_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0438
- CGC Family ID: CGCFAM_00217
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0438_7 | HRGMv2_0438_7_30 | 44368 | 47442 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0438_7 | HRGMv2_0438_7_31 | 47462 | 48835 | - | TIG |
| TC | HRGMv2_0438_7 | HRGMv2_0438_7_32 | 49524 | 51215 | - | 8.A.46.1.6 |
| TC | HRGMv2_0438_7 | HRGMv2_0438_7_33 | 51229 | 54333 | - | 1.B.14.6.1 |
| TF | HRGMv2_0438_7 | HRGMv2_0438_7_34 | 54708 | 58766 | + | HTH_AraC |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_35 | 58942 | 60954 | - | GH43_17 | GH43_19 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_36 | 61193 | 64288 | - | GH2 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_37 | 64492 | 66420 | - | GH51_2 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_38 | 66454 | 68478 | - | GH127 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_39 | 68495 | 71002 | - | GH51_2 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_40 | 71206 | 73152 | - | GH97 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_41 | 73184 | 75124 | - | GH43_19 | GH43_34 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_42 | 75235 | 76362 | - | GH105 |
| CAZyme | HRGMv2_0438_7 | HRGMv2_0438_7_43 | 76382 | 77704 | - | PL42 |
Gene ID: HRGMv2_0438_7_30
Type: TC
Location: 44368 - 47442 (-)
Type: TC
Location: 44368 - 47442 (-)
Gene ID: HRGMv2_0438_7_31
Type: pfam
Location: 47462 - 48835 (-)
Type: pfam
Location: 47462 - 48835 (-)
Gene ID: HRGMv2_0438_7_32
Type: TC
Location: 49524 - 51215 (-)
Type: TC
Location: 49524 - 51215 (-)
Gene ID: HRGMv2_0438_7_33
Type: TC
Location: 51229 - 54333 (-)
Type: TC
Location: 51229 - 54333 (-)
Gene ID: HRGMv2_0438_7_34
Type: TF
Location: 54708 - 58766 (+)
Type: TF
Location: 54708 - 58766 (+)
Gene ID: HRGMv2_0438_7_35
Type: CAZyme
Location: 58942 - 60954 (-)
Type: CAZyme
Location: 58942 - 60954 (-)
Gene ID: HRGMv2_0438_7_36
Type: CAZyme
Location: 61193 - 64288 (-)
Type: CAZyme
Location: 61193 - 64288 (-)
Gene ID: HRGMv2_0438_7_37
Type: CAZyme
Location: 64492 - 66420 (-)
Type: CAZyme
Location: 64492 - 66420 (-)
Gene ID: HRGMv2_0438_7_38
Type: CAZyme
Location: 66454 - 68478 (-)
Type: CAZyme
Location: 66454 - 68478 (-)
Gene ID: HRGMv2_0438_7_39
Type: CAZyme
Location: 68495 - 71002 (-)
Type: CAZyme
Location: 68495 - 71002 (-)
Gene ID: HRGMv2_0438_7_40
Type: CAZyme
Location: 71206 - 73152 (-)
Type: CAZyme
Location: 71206 - 73152 (-)
Gene ID: HRGMv2_0438_7_41
Type: CAZyme
Location: 73184 - 75124 (-)
Type: CAZyme
Location: 73184 - 75124 (-)
Gene ID: HRGMv2_0438_7_42
Type: CAZyme
Location: 75235 - 76362 (-)
Type: CAZyme
Location: 75235 - 76362 (-)
Gene ID: HRGMv2_0438_7_43
Type: CAZyme
Location: 76382 - 77704 (-)
Type: CAZyme
Location: 76382 - 77704 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.